Browse Element(s) Details


Os.57135.1.S1_at

Description gb:AK110997.1
DB_XREF= gi:32996206
TID=Os.57135.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E07, full insert sequence.
FL= gb:AK110997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1396011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed
LOC_Os05g13970Os.51904.1.S1_at11/115+7754764..7760288Phosphorylase family protein, expressed
LOC_Os05g13980NANA5+7764401..7764640hypothetical protein
LOC_Os05g13990NANA5+7767619..7770923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.14491.2.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.47463.1.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57135.1.S1_at--555--3811Chr05:7749132..7749156 (25 bp)
CTCCTCCAGGATTTGAGTTATCGAA
LOC_Os05g13960
Os.57135.1.S1_at--465--9771Chr05:7749172..7749196 (25 bp)
TAATGCTCCTCCAAGATGTGAGTTA
LOC_Os05g13960
Os.57135.1.S1_at--519--5271Chr05:7749217..7749241 (25 bp)
GAATGCTCCTCCAAGATGTGAGTTA
LOC_Os05g13960
Os.57135.1.S1_at--54--251Chr05:7749384..7749408 (25 bp)
ATATACAATCACATGCCCTAGAGCA
LOC_Os05g13960
Os.57135.1.S1_at--328--10071Chr05:7749550..7749574 (25 bp)
TAGTGCCATGTCTGGGCTACAACAA
LOC_Os05g13960
Os.57135.1.S1_at--131--5931Chr05:7749586..7749610 (25 bp)
GAGCTTGCAGGAGGAGATCGTCACT
LOC_Os05g13960
Os.57135.1.S1_at--943--6991Chr05:7749605..7749629 (25 bp)
GTCACTCGACGATTTAATAGCTCGG
LOC_Os05g13960
Os.57135.1.S1_at--58--3111Chr05:7749620..7749644 (25 bp)
AATAGCTCGGGTTGACCTCGTATGT
LOC_Os05g13960
Os.57135.1.S1_at--950--1751Chr05:7749634..7749658 (25 bp)
ACCTCGTATGTCTATTATTGTTGTT
LOC_Os05g13960
Os.57135.1.S1_at--492--9911Chr05:7749658..7749682 (25 bp)
TACGGACTATTATGTTTTGCGAACC
LOC_Os05g13960
Os.57135.1.S1_at--370--10231Chr05:7749673..7749697 (25 bp)
TTTGCGAACCATGTTGAAGTCGTAT
LOC_Os05g13960
Target Sequence 
CTCCTCCAGGATTTGAGTTATCGAAGACTCCAGAAAGTATTAATGCTCCTCCAAGATGTGAGTTATCTGAGAGACCAGAA
AGTAGGAATGCTCCTCCAAGATGTGAGTTATCTGAGAGACCAGAAAATAGGAAGGGGGAGAAAGAAAAACTACGACGAGG
TGGAGATGTGGTCTTTGTGGAGGATTTAGATGATTTGTTGGCAAAGAAGAAAGAGGCAGATGTGGAGAAAGAGCTCAAGA
AAGATGAGAGATATATACAATCACATGCCCTAGAGCAAGAGAAGGTTGCACTAGAACAAGCGAAGGTTGCAAACGAGACA
AAAAATCTTGAGATGAGGAGCAAAGAATTAGAATTGAAGACCAAGGAGATAGATTTGAAAAGAATGTTAGAAGAAGAGAG
GATTATGACTATGGATATTAGTGCCATGTCTGGGCTACAACAACAATATTACAAGAGCTTGCAGGAGGAGATCGTCACTC
GACGATTTAATAGCTCGGGTTGACCTCGTATGTCTATTATTGTTGTTACGGACTATTATGTTTTGCGAACCATGTTGAAG
TCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis