Browse Element(s) Details


Os.8018.2.S1_a_at

Description gb:CR288035
DB_XREF= gi:44674601
DB_XREF=CR288035
CLONE=y688d06p3
TID=Os.8018.2
CNT=130
FEA=EST
TIER=Stack
STK=11
UG=Os.8018 (NCBI UniGene Cluster)
UG_TITLE=Proline-rich protein RiP-15 mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1394011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein
LOC_Os05g13920Os.45212.1.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13920Os.31497.2.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8018.2.S1_a_at--292--4631Chr05:7726176..7726200 (25 bp)
GCGATCACCGGAGACCGAGCACTTG
LOC_Os05g13940
Os.8018.2.S1_a_at--921--1771Chr05:7726170..7726194 (25 bp)
ACCGGAGACCGAGCACTTGCTGCTG
LOC_Os05g13940
Os.8018.2.S1_a_at--233--1791Chr05:7726163..7726187 (25 bp)
ACCGAGCACTTGCTGCTGCACGATT
LOC_Os05g13940
Os.8018.2.S1_a_at--482--9111Chr05:7726150..7726174 (25 bp)
TGCTGCACGATTGAGGCATTGACGA
LOC_Os05g13940
Os.8018.2.S1_a_at--788--5091Chr05:7726146..7726170 (25 bp)
GCACGATTGAGGCATTGACGACATT
LOC_Os05g13940
Os.8018.2.S1_a_at--590--4931Chr05:7726135..7726159 (25 bp)
GCATTGACGACATTATTTCGCCAGA
LOC_Os05g13940
Os.8018.2.S1_a_at--462--5791Chr05:7726130..7726154 (25 bp)
GACGACATTATTTCGCCAGAGGGAG
LOC_Os05g13940
Os.8018.2.S1_a_at--945--2071Chr05:7726126..7726150 (25 bp)
ACATTATTTCGCCAGAGGGAGGAGC
LOC_Os05g13940
Os.8018.2.S1_a_at--36--1071Chr05:7726111..7726135 (25 bp)
AGGGAGGAGCGAGCGAGTCACTACA
LOC_Os05g13940
Os.8018.2.S1_a_at--83--10411Chr05:7726029..7726053 (25 bp)
TTATTTCACGTTGTTTTTTCAGATG
LOC_Os05g13940
Os.8018.2.S1_a_at--641--1871Chr05:7726022..7726046 (25 bp)
ACGTTGTTTTTTCAGATGTGCCACT
LOC_Os05g13940
Target Sequence 
GCGATCACCGGAGACCGAGCACTTGCTGCTGCACGATTGAGGCATTGACGACATTATTTCGCCAGAGGGAGGAGCGAGCG
AGTCACTACACTGTACCGTTTCTGGAATAAAGTGATGAGCTAGCTTTCTGCTTGCTTTTTTTCCCTTTTATTTCACGTTG
TTTTTTCAGATGTGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8018.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis