Browse Element(s) Details


OsAffx.26069.1.S1_x_at

Description tigr:9632.m01771
TID=OsAffx.26069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1951011/11hypothetical protein
LOC_Os04g110803/11hypothetical protein
LOC_Os08g230203/11retrotransposon protein, putative, unclassified
LOC_Os05g139103/11hypothetical protein
LOC_Os05g199903/11hypothetical protein
LOC_Os11g282302/11Transposable element protein, putative, Transposase_28
LOC_Os04g229602/11hypothetical protein
LOC_Os11g309702/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g19470OsAffx.18976.1.S1_at1/114+10819996..10821443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g19480NANA4+10822666..10824774retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19490Os.40360.1.S1_x_at5/114+10829425..10832233hypothetical protein
LOC_Os04g19490Os.40360.1.S1_at3/114+10829425..10832233hypothetical protein
LOC_Os04g19490Os.40855.5.S1_x_at3/114+10829425..10832233hypothetical protein
LOC_Os04g19500NANA4+10835448..10837121retrotransposon protein, putative, unclassified
LOC_Os04g19510OsAffx.26069.1.S1_x_at11/114+10843788..10844096hypothetical protein
LOC_Os04g19520OsAffx.22699.1.S1_x_at2/114+10846871..10847717retrotransposon protein, putative, unclassified
LOC_Os04g19530NANA4+10848246..10849104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19540OsAffx.16111.1.S1_at2/114+10849345..10861071retrotransposon protein, putative, unclassified
LOC_Os04g19540OsAffx.29404.1.S1_at1/114+10849345..10861071retrotransposon protein, putative, unclassified
LOC_Os04g19540OsAffx.17299.1.S1_at1/114+10849345..10861071retrotransposon protein, putative, unclassified
LOC_Os04g19550OsAffx.22896.1.S1_x_at1/114+10863294..10863698transposon protein, putative, unclassified
LOC_Os04g19560NANA4+10864854..10866756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19570NANA4+10867169..10871048retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26069.1.S1_x_at--397--2071Chr04:10843853..10843877 (25 bp)
ACTTGTCAAGGCGAAGTCATCCTAC
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--416--10811Chr04:10843855..10843879 (25 bp)
TTGTCAAGGCGAAGTCATCCTACTT
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--113--1171Chr04:10843867..10843891 (25 bp)
AGTCATCCTACTTCGGCAGACAGTC
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--1106--551Chr04:10843871..10843895 (25 bp)
ATCCTACTTCGGCAGACAGTCTTCG
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--322--9252Chr04:10843872..10843896 (25 bp)
TCCTACTTCGGCAGACAGTCTTCGC
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--623--3712Chr04:10843874..10843898 (25 bp)
CTACTTCGGCAGACAGTCTTCGCCT
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--647--8391Chr04:10843923..10843947 (25 bp)
TGGCCTGGTTCCTCGGCCCTCGCAG
LOC_Os04g19510
OsAffx.26069.1.S1_x_at--398--20719Chr11:15740328..15740352 (25 bp)
ACTTGTCAAGGCGAAGTCATCCTCC
NONE
OsAffx.26069.1.S1_x_at--242--28518Chr11:17525442..17525466 (25 bp)
AAGTCATCCTCCTTCGGCAGACAGT
NONE
OsAffx.26069.1.S1_x_at--88--82722Chr11:17525457..17525477 (21 bp)
GGCAGACAGTCTTCGCCTTGCGCCA
NONE
OsAffx.26069.1.S1_x_at--322--4431Chr04:10843996..10844020 (25 bp)
GCCTTGCGCCATTCTTGTTCCATAG
LOC_Os04g19510
Target Sequence 
ACTTGTCAAGGCGAAGTCATCCTACTTCGGCAGACAGTCTTCGCCTTGCACCCTTCGCCTGAGACGCCTCTGGCCTGGTT
CCTCGGCCCTCGCAGGGGCGAACTTGTCAAGGCGAAGTCATCCTCCTTCGGCAGACAGTCTTCGCCTTGCGCCATTCTTG
TTCCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26069.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis