Browse Element(s) Details


OsAffx.18976.1.S1_at

Description tigr:9639.m02085
TID=OsAffx.18976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F2D10.37
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g017904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321903/11hypothetical protein
LOC_Os09g213701/11Papain family cysteine protease containing protein, expressed
LOC_Os12g146101/11Protein kinase domain containing protein
LOC_Os04g424901/11DIE2/ALG10 family, putative, expressed
LOC_Os04g194701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01830NANA4+519882..520543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18976.1.S1_at--731--10672Chr11:12945109..12945133 (25 bp)
TTCCTCTTGCGGCCCATCTGGTGGA
NONE
OsAffx.18976.1.S1_at--1059--4172Chr11:12945121..12945145 (25 bp)
CCCATCTGGTGGAAGCGGTAGTGGA
NONE
OsAffx.18976.1.S1_at--266--5331Chr11:12945174..12945675 (25 bp)
GAAGTGGCGATGTCTGTTGGTAATC
NONE
OsAffx.18976.1.S1_at--957--8476Chr11:12945659..12945679 (21 bp)
TGGCGATGTCTGTTGGTAATCTAGT
NONE
OsAffx.18976.1.S1_at--395--6277Chr11:12945659..12945683 (25 bp)
GATGTCTGTTGGTAATCTAGTGTCA
NONE
OsAffx.18976.1.S1_at--177--3877Chr11:12945664..12945688 (25 bp)
CTGTTGGTAATCTAGTGTCATGGTG
NONE
OsAffx.18976.1.S1_at--276--3073Chr11:12945672..12945725 (25 bp)
AATCTAGTGTCATGGTGTACGGCGA
NONE
OsAffx.18976.1.S1_at--1--4071Chr11:12945753..12945777 (25 bp)
CGAGGAGGCTGGTCTCTCTATCGGA
NONE
OsAffx.18976.1.S1_at--823--6211Chr11:12945757..12945781 (25 bp)
GAGGCTGGTCTCTCTATCGGAGCAG
NONE
OsAffx.18976.1.S1_at--250--8351Chr11:12945759..12945783 (25 bp)
GGCTGGTCTCTCTATCGGAGCAGCA
NONE
OsAffx.18976.1.S1_at--579--2152Chr11:12946012..12946036 (25 bp)
ACAGCCCGTGGCTGTGGCCATCGAG
NONE
Target Sequence 
TTCCTCTTGCGGCCCATCTGGTGGAAGCGGTAGTGGAGGCGGCATGCGGTGGTGGATTTGGCGGAGAAGTGGCGGCGCAC
GGTGGTGGATTTGGCGGAGAAGTGGCGATGTCTGTTGGTAATCTAGTGTCATGGTGTACGGCGACCATCGAGAGCCTGAA
CATGATCAAGACGAGGAGGCTGGTCTCTCTATCGGAGCAGCAGCTGGTGGACTGCGACAGCTATGACGGTGGCTGCAACT
TAGGGTCGTACGGGCGGGCGTACAAATGGGTTGTCGAGAACGGTGGCCTCACCACGGAGGCGGACTACCCGTACACGGCG
CGGCGGGGCCCCCGCAACCGCGCCAAGTCCGCGCACCATGCCGCCAAGATCACCGGCTTCGGGAAGGTGACGCCGCGGAA
CGAGGCGGCGTTGCAGGCTGCCGTCGCTCGACAGCCCGTGGCTGTGGCCATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis