Browse Element(s) Details


OsAffx.30648.1.S1_at

Description tigr:9638.m02879
TID=OsAffx.30648.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3302011/11hypothetical protein
LOC_Os04g282203/11hypothetical protein
LOC_Os09g175702/11hypothetical protein
LOC_Os01g592302/11retrotransposon protein, putative, unclassified
LOC_Os07g403702/11hypothetical protein
LOC_Os04g017501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g33020OsAffx.30648.1.S1_at11/1110+16961305..16962003hypothetical protein
LOC_Os10g33020OsAffx.14013.2.S1_at2/1110+16961305..16962003hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_x_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30648.1.S1_at--984--574Chr11:20434064..20434088 (25 bp)
ATCCAGGATATGCAGGTCGGCATGA
NONE
OsAffx.30648.1.S1_at--977--2453Chr10:16961720..16961744 (25 bp)
AAGCAAGCGCTATGGTGTTAATTTC
LOC_Os10g33020
OsAffx.30648.1.S1_at--249--5172Chr10:16961718..16961742 (25 bp)
GCAAGCGCTATGGTGTTAATTTCTT
LOC_Os10g33020
OsAffx.30648.1.S1_at--371--3253Chr10:16961717..16961741 (25 bp)
CAAGCGCTATGGTGTTAATTTCTTC
LOC_Os10g33020
OsAffx.30648.1.S1_at--865--7412Chr03:23473678..23473701 (24 bp)
GTGTTAATTTCTTCAAGGGATTCAA
NONE
OsAffx.30648.1.S1_at--435--9752Chr03:23473681..23473705 (25 bp)
TAATTTCTTCAAGGGATTCAAGGCA
NONE
OsAffx.30648.1.S1_at--48--152Chr03:23473683..23473707 (25 bp)
ATTTCTTCAAGGGATTCAAGGCAAC
NONE
OsAffx.30648.1.S1_at--580--9551Chr10:16961697..16961721 (25 bp)
TCTTCAAGGGATTCAAGGCAACAGT
LOC_Os10g33020
OsAffx.30648.1.S1_at--1110--10491Chr10:16961695..16961719 (25 bp)
TTCAAGGGATTCAAGGCAACAGTGA
LOC_Os10g33020
OsAffx.30648.1.S1_at--20--9739Chr10:518569..518590 (22 bp)
TCAAGGCAACAGTGAATTTTCTCAA
NONE
OsAffx.30648.1.S1_at--150--2939Chr10:518571..518590 (20 bp)
AAGGCAACAGTGAATTTTCTCAAAC
NONE
Target Sequence 
ATCCAGGATATGCAGGTCGGCATGATGGGGGATATATGGAAATCTGCGTCACTGAAGAGGAAAAGCAAGCGCTATGGTGT
TAATTTCTTCAAGGGATTCAAGGCAACAGTGAATTTTCTCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis