Browse Element(s) Details


Os.46117.1.S1_at

Description gb:NM_196934.1
DB_XREF= gi:37535227
TID=Os.46117.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46117 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0006L06.16), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3299010/11Leucine Rich Repeat family protein, expressed
LOC_Os11g067801/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g33020OsAffx.30648.1.S1_at11/1110+16961305..16962003hypothetical protein
LOC_Os10g33020OsAffx.14013.2.S1_at2/1110+16961305..16962003hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46117.1.S1_at--611--9371Chr10:16940917..16940941 (25 bp)
TCGACCCGGACTACGAGCCGCGGGT
LOC_Os10g32990
Os.46117.1.S1_at--1002--9391Chr10:16940891..16940915 (25 bp)
TCGGACTTCGGCACGGCGAGGTTCC
LOC_Os10g32990
Os.46117.1.S1_at--526--9871Chr11:3311543..3311572 (23 bp)
TACATGGCACCAGAGCTGGCGTACA
LOC_Os11g06780
Os.46117.1.S1_at--540--3911Chr10:16938261..16938285 (25 bp)
CTGGCGTACATGAGGGTGACGACCA
LOC_Os10g32990
Os.46117.1.S1_at--399--9871Chr10:16938255..16938279 (25 bp)
TACATGAGGGTGACGACCAAGTGCG
LOC_Os10g32990
Os.46117.1.S1_at--998--4011Chr10:16938214..16938238 (25 bp)
CGTCGTGGCGATGGAGATGCTCATG
LOC_Os10g32990
Os.46117.1.S1_at--851--1291Chr10:16938200..16938224 (25 bp)
AGATGCTCATGGGCAAGTACCCCGG
LOC_Os10g32990
Os.46117.1.S1_at--809--9332Chr02:12886100..12886213 (25 bp)
TCGCCGCAGTCACTGTCAGCCGAGG
NONE
Os.46117.1.S1_at--1119--4171Chr10:16938011..16938035 (25 bp)
CCGGGCAGGTCGTGTTCGCCTTCGT
LOC_Os10g32990
Os.46117.1.S1_at--428--8371Chr10:16937906..16937930 (25 bp)
GGCGACCGATCCTGGACAGGCCGTT
LOC_Os10g32990
Os.46117.1.S1_at--228--8531Chr10:16937894..16937918 (25 bp)
TGGACAGGCCGTTCGAGATGATCAA
LOC_Os10g32990
Target Sequence 
TCGACCCGGACTACGAGCCGCGGGTGTCGGACTTCGGCACGGCGAGGTTCCTCGTCCCCGGCCGCTCCACCTGCGACAGC
ATCGCCGGCTCCTACGGCTACATGGCACCAGAGCTGGCGTACATGAGGGTGACGACCAAGTGCGACGTGTACAGCTTCNG
CGTCGTGGCGATGGAGATGCTCATGGGCAAGTACCCCGGCGGGCTCATCAGCTCGCTGCAACACTCGCCGCAGTCACTGT
CAGCCGAGGGGCACNACNNNAGCGGCGGCGGCNNCGNCGAGGANGCGTNNGCGTCGGCGTCGCGCCNGCTNNTGCTCAAG
GACNTGGNGGATCAGAGGCTGGACGCCCCGGCGGGGAAGCTGGCCGGGCAGGTCGTGTTCGCCTTCGTCGTGGCGCTGTC
TTGCGTCCGGACGAGCCCCGACGCCCGGCCGACGATGCGCGCCGTCGCGCAGGAGCTCGCCGCTCGCCGGCGACCGATCC
TGGACAGGCCGTTCGAGATGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis