Browse Element(s) Details


Os.10728.1.S1_at

Description gb:AK064814.1
DB_XREF= gi:32974832
TID=Os.10728.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full insert sequence.
FL= gb:AK064814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4626011/11Serine carboxypeptidase family protein, expressed
LOC_Os01g629001/11Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g435201/11ceramidase family protein, putative, expressed
LOC_Os12g365701/11retrotransposon protein, putative, unclassified
LOC_Os10g329901/11Leucine Rich Repeat family protein, expressed
LOC_Os03g520401/11Serine carboxypeptidase family protein, expressed
LOC_Os05g438301/11Proline iminopeptidase, putative, expressed
LOC_Os04g447301/11Lanthionine synthetase C-like protein, expressed
LOC_Os01g339301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46230OsAffx.22940.1.S1_s_at9/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.22940.5.S1_x_at8/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.22940.2.S1_s_at8/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.22940.5.S1_at8/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230Os.35344.3.S1_x_at7/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.22940.2.S1_at7/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.22940.3.S1_x_at7/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230Os.35344.18.S1_x_at5/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46230OsAffx.31552.2.S1_at1/112+28179717..28184271transposon protein, putative, Mutator sub-class
LOC_Os02g46240OsAffx.22848.3.S1_x_at2/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46240OsAffx.22848.4.S1_x_at1/112+28192256..28196533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46250NANA2+28197633..28198339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006508biological_processproteolysis
GO:0006561biological_processproline biosynthesis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009269biological_processresponse to desiccation
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0019748biological_processsecondary metabolism
GO:0042538biological_processhyperosmotic salinity response
GO:0003824molecular_functioncatalytic activity
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016752molecular_functionsinapoyltransferase activity
GO:0016804molecular_functionprolyl aminopeptidase activity
GO:0017040molecular_functionceramidase activity
GO:0017084molecular_functiondelta1-pyrroline-5-carboxylate synthetase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10728.1.S1_at--780--2171Chr02:28210070..28210094 (25 bp)
ACACGTGATCTTCCAAGCAGCATAG
LOC_Os02g46260
Os.10728.1.S1_at--543--7871Chr02:28210121..28210143 (23 bp)
GGTTACCGTGCTCTTGTGTACAGCG
LOC_Os02g46260
Os.10728.1.S1_at--420--8752Chr04:28352073..28352093 (21 bp)
TGTACAGCGGAGACCACGACCCTAT
NONE
Os.10728.1.S1_at--724--3591Chr02:28210287..28210311 (25 bp)
CATTCTCAGGCACGCAGGCATGGAT
LOC_Os02g46260
Os.10728.1.S1_at--1147--8432Chr03:29814506..29814746 (25 bp)
GGCCAGGCTGCAGGGTTAAATTCAC
LOC_Os03g52040
Os.10728.1.S1_at--361--2191Chr02:28210652..28210676 (25 bp)
ACAACCTGACCTTTGCGACAATAAA
LOC_Os02g46260
Os.10728.1.S1_at--598--9831Chr02:28210805..28210826 (22 bp)
TAAAGGGTGGTTGCCATATTCCTCC
LOC_Os02g46260
Os.10728.1.S1_at--20--4131Chr02:28210901..28210925 (25 bp)
CGCACAATACGGCATCTCTGAATTC
LOC_Os02g46260
Os.10728.1.S1_at--1005--3174Chr10:16121684..16121739 (24 bp)
CAATATAACTAGCTGGATGGCCCGT
NONE
Os.10728.1.S1_at--1094--2594Chr10:22091001..22091023 (22 bp)
AACCCTTATCATCTCGTGTTTCTAA
NONE
Os.10728.1.S1_at--917--1047105Chr11:26723926..26723950 (25 bp)
TTAAAAGTCACACCAGTTGCTACCC
NONE
Target Sequence 
ACACGTGATCTTCCAAGCAGCATAGAATGCCATTTCAACGTCACCACCAGGGGTTACCGTGCTCTTGTGTACAGCGGAGA
CCACGACCCTATTGTGCCATTCTCAGGCACGCAGGCATGGATAAGATCATTAAACTTTTCCATTGTTGATGATTGGAGAG
CATGGCACCTTGATGGCCAGGCTGCAGGGTTAAATTCACAATCAAGTATGCTAACAACCTGACCTTTGCGACAATAAAGG
GTGGTTGCCATATTCCTCCCGAAAATCGGCCNAAGGAATCCTTCATTATGGCAAAACGGTGGCTGGCTGGTGGACCCCTC
TNATGTGCCGTCGCGCACAATACGGCATCTCTGAATTCAGATTCCGATCATCATCAACATATGTAATGTGCTCATTATAT
TGAGTAAATCAATATAACTAGCTGGATGGCCCGTGCAATTGCGCGGCTAGCACCCAAACAAAATTATATATTTTTTATAT
GATTTTACTTAAAATTTATTAGATAGCTATCTTATTATCTTAAGACTTTGAAAGACCAACCCTTATCATCTCGTGTTTCT
AATTATATAGTTTTTAAAAGTCACACCAGTTGCTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis