Browse Element(s) Details


Os.35344.3.S1_x_at

Description gb:NM_197331.1
DB_XREF= gi:37536021
TID=Os.35344.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35344 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mutator-like transposase (OSJNBa0026L12.21), mRNA.
PROD=mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1371011/11transposon protein, putative, Mutator sub-class
LOC_Os05g4076011/11Transposable element protein, putative, MuDR
LOC_Os01g6109011/11transposon protein, putative, Mutator sub-class
LOC_Os02g1836011/11transposon protein, putative, Mutator sub-class
LOC_Os12g2215011/11SWIM zinc finger family protein
LOC_Os04g4780011/11transposon protein, putative, Mutator sub-class
LOC_Os01g6088011/11transposon protein, putative, Mutator sub-class
LOC_Os04g0998011/11transposon protein, putative, Mutator sub-class
LOC_Os07g3023011/11transposon protein, putative, Mutator sub-class
LOC_Os04g5939011/11transposon protein, putative, Mutator sub-class
LOC_Os08g0545011/11transposon protein, putative, Mutator sub-class
LOC_Os06g4448011/11transposon protein, putative, Mutator sub-class
LOC_Os04g5147011/11Transposable element protein, putative, MuDR
LOC_Os11g3308011/11transposon protein, putative, Mutator sub-class
LOC_Os10g3699011/11transposon protein, putative, Mutator sub-class
LOC_Os10g2479011/11transposon protein, putative, Mutator sub-class
LOC_Os07g3431011/11Transposable element protein, putative, MuDR
LOC_Os01g2725011/11transposon protein, putative, Mutator sub-class
LOC_Os03g5313011/11transposon protein, putative, Mutator sub-class
LOC_Os01g0949011/11transposon protein, putative, Mutator sub-class
LOC_Os07g3370010/11transposon protein, putative, Mutator sub-class
LOC_Os04g5382010/11transposon protein, putative, Mutator sub-class
LOC_Os11g3588010/11transposon protein, putative, Mutator sub-class
LOC_Os07g4221010/11transposon protein, putative, Mutator sub-class
LOC_Os01g3691010/11Transposable element protein, putative, MuDR
LOC_Os12g3915010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g2021010/11transposon protein, putative, Mutator sub-class
LOC_Os02g0911010/11SWIM zinc finger family protein
LOC_Os06g4190010/11transposon protein, putative, Mutator sub-class
LOC_Os07g1339010/11Transposable element protein, putative, MuDR
LOC_Os05g4772010/11hypothetical protein
LOC_Os02g1173010/11transposon protein, putative, Mutator sub-class
LOC_Os03g0429010/11Transposable element protein, putative, MuDR
LOC_Os05g5074010/11Transposable element protein, putative, MuDR
LOC_Os09g3782010/11transposon protein, putative, Mutator sub-class
LOC_Os01g3522010/11transposon protein, putative, Mutator sub-class
LOC_Os04g0235010/11transposon protein, putative, Mutator sub-class
LOC_Os08g0682010/11transposon protein, putative, Mutator sub-class
LOC_Os01g1204010/11Transposable element protein, putative, MuDR
LOC_Os01g5422010/11transposon protein, putative, Mutator sub-class
LOC_Os06g1923010/11hypothetical protein
LOC_Os01g4779010/11transposon protein, putative, Mutator sub-class
LOC_Os03g137809/11transposon protein, putative, Mutator sub-class
LOC_Os06g142909/11transposon protein, putative, Mutator sub-class
LOC_Os09g389009/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g190509/11SWIM zinc finger family protein
LOC_Os02g109109/11transposon protein, putative, Mutator sub-class
LOC_Os06g503209/11transposon protein, putative, Mutator sub-class
LOC_Os11g430609/11transposon protein, putative, Mutator sub-class
LOC_Os03g118309/11Transposable element protein, putative, MuDR
LOC_Os02g459609/11transposon protein, putative, Mutator sub-class
LOC_Os03g468309/11transposon protein, putative, Mutator sub-class
LOC_Os11g062809/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g255809/11Transposable element protein, putative, MuDR
LOC_Os07g429809/11transposon protein, putative, Mutator sub-class
LOC_Os06g364709/11transposon protein, putative, Mutator sub-class
LOC_Os01g682209/11transposon protein, putative, Mutator sub-class
LOC_Os06g370309/11transposon protein, putative, Mutator sub-class
LOC_Os04g534809/11transposon protein, putative, Mutator sub-class
LOC_Os03g053609/11retrotransposon protein, putative, unclassified
LOC_Os04g581509/11Transposable element protein, putative, MuDR
LOC_Os10g026609/11transposon protein, putative, Mutator sub-class
LOC_Os12g422709/11transposon protein, putative, Mutator sub-class
LOC_Os03g623509/11hypothetical protein
LOC_Os03g191609/11transposon protein, putative, Mutator sub-class
LOC_Os04g253309/11transposon protein, putative, Mutator sub-class
LOC_Os06g479909/11Transposable element protein, putative, MuDR
LOC_Os07g406509/11transposon protein, putative, Mutator sub-class
LOC_Os07g180609/11transposon protein, putative, Mutator sub-class
LOC_Os02g061109/11transposon protein, putative, Mutator sub-class
LOC_Os10g426009/11transposon protein, putative, Mutator sub-class
LOC_Os06g047709/11transposon protein, putative, Mutator sub-class
LOC_Os06g129009/11transposon protein, putative, Mutator sub-class
LOC_Os01g268369/11transposon protein, putative, Mutator sub-class
LOC_Os12g165009/11transposon protein, putative, Mutator sub-class
LOC_Os11g436609/11transposon protein, putative, Mutator sub-class
LOC_Os05g080809/11transposon protein, putative, Mutator sub-class
LOC_Os10g286509/11transposon protein, putative, Mutator sub-class
LOC_Os07g125009/11transposon protein, putative, Mutator sub-class
LOC_Os09g323909/11transposon protein, putative, Mutator sub-class
LOC_Os12g317299/11Transposable element protein, putative, MuDR
LOC_Os02g042009/11transposon protein, putative, Mutator sub-class
LOC_Os03g630309/11transposon protein, putative, Mutator sub-class
LOC_Os11g332909/11Transposable element protein, putative, MuDR
LOC_Os02g033509/11transposon protein, putative, Mutator sub-class
LOC_Os06g420109/11Transposable element protein, putative, MuDR
LOC_Os02g455509/11transposon protein, putative, Mutator sub-class
LOC_Os09g303709/11transposon protein, putative, Mutator sub-class
LOC_Os09g376309/11Transposable element protein, putative, MuDR
LOC_Os01g402309/11transposon protein, putative, Mutator sub-class
LOC_Os09g236709/11hypothetical protein
LOC_Os08g348109/11transposon protein, putative, Mutator sub-class
LOC_Os04g316509/11transposon protein, putative, Mutator sub-class
LOC_Os02g016909/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g269169/11Transposable element protein, putative, MuDR
LOC_Os11g474449/11Transposable element protein, putative, MuDR
LOC_Os05g357509/11hypothetical protein
LOC_Os01g718909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g172409/11transposon protein, putative, Mutator sub-class
LOC_Os04g309909/11transposon protein, putative, Mutator sub-class
LOC_Os05g382409/11transposon protein, putative, Mutator sub-class
LOC_Os01g049609/11transposon protein, putative, Mutator sub-class
LOC_Os02g582409/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g061109/11transposon protein, putative, Mutator sub-class
LOC_Os07g375909/11hypothetical protein
LOC_Os06g095809/11Transposable element protein, putative, MuDR
LOC_Os10g332209/11Transposable element protein, putative, MuDR
LOC_Os04g540609/11transposon protein, putative, Mutator sub-class
LOC_Os07g261209/11transposon protein, putative, Mutator sub-class
LOC_Os06g142509/11transposon protein, putative, Mutator sub-class
LOC_Os07g350409/11transposon protein, putative, Mutator sub-class
LOC_Os10g181608/11Transposable element protein, putative, MuDR
LOC_Os04g183908/11transposon protein, putative, Mutator sub-class
LOC_Os05g068508/11calcineurin-like phosphoesterase family protein, putative
LOC_Os01g439708/11transposon protein, putative, Mutator sub-class
LOC_Os07g425308/11transposon protein, putative, Mutator sub-class
LOC_Os01g511808/11transposon protein, putative, Mutator sub-class
LOC_Os11g442108/11transposon protein, putative, Mutator sub-class
LOC_Os11g091208/11hypothetical protein
LOC_Os01g644208/11hypothetical protein
LOC_Os01g470008/11transposon protein, putative, Mutator sub-class
LOC_Os10g221648/11transposon protein, putative, Mutator sub-class
LOC_Os06g348208/11Transposable element protein, putative, MuDR
LOC_Os07g281308/11transposon protein, putative, Mutator sub-class
LOC_Os09g283308/11transposon protein, putative, Mutator sub-class
LOC_Os09g124208/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g411408/11hypothetical protein
LOC_Os07g128608/11transposon protein, putative, Mutator sub-class
LOC_Os02g099508/11transposon protein, putative, Mutator sub-class
LOC_Os08g036608/11transposon protein, putative, Mutator sub-class
LOC_Os02g418708/11Transposable element protein, putative, MuDR
LOC_Os05g459708/11transposon protein, putative, Mutator sub-class
LOC_Os11g442408/11Transposable element protein, putative, MuDR
LOC_Os02g293308/11transposon protein, putative, Mutator sub-class
LOC_Os11g255208/11transposon protein, putative, Mutator sub-class
LOC_Os07g461408/11Transposable element protein, putative, MuDR
LOC_Os02g466308/11SWIM zinc finger family protein
LOC_Os05g085008/11transposon protein, putative, Mutator sub-class
LOC_Os10g325608/11transposon protein, putative, Mutator sub-class
LOC_Os07g325808/11Transposable element protein, putative, MuDR
LOC_Os11g178308/11transposon protein, putative, Mutator sub-class
LOC_Os07g057708/11transposon protein, putative, Mutator sub-class
LOC_Os04g563807/11transposon protein, putative, Mutator sub-class
LOC_Os01g738707/11transposon protein, putative, Mutator sub-class
LOC_Os06g383607/11hypothetical protein
LOC_Os07g296507/11transposon protein, putative, Mutator sub-class
LOC_Os03g282047/11transposon protein, putative, Mutator sub-class
LOC_Os10g363807/11transposon protein, putative, Mutator sub-class
LOC_Os02g462307/11transposon protein, putative, Mutator sub-class
LOC_Os03g388207/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g184807/11transposon protein, putative, Mutator sub-class
LOC_Os01g207606/11SWIM zinc finger family protein
LOC_Os03g608306/11hypothetical protein
LOC_Os12g046706/11transposon protein, putative, Mutator sub-class
LOC_Os01g142906/11hypothetical protein
LOC_Os10g307406/11transposon protein, putative, Mutator sub-class
LOC_Os11g444106/11transposon protein, putative, Mutator sub-class
LOC_Os01g218406/11transposon protein, putative, Mutator sub-class
LOC_Os12g395706/11Transposable element protein, putative, MuDR
LOC_Os08g366705/11hypothetical protein
LOC_Os03g527405/11SWIM zinc finger family protein
LOC_Os03g556905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g520505/11transposon protein, putative, Mutator sub-class
LOC_Os12g262045/11transposon protein, putative, Mutator sub-class
LOC_Os01g499505/11transposon protein, putative, Mutator sub-class
LOC_Os12g317005/11transposon protein, putative, Mutator sub-class
LOC_Os01g156204/11transposon protein, putative, Mutator sub-class
LOC_Os08g255803/11Transposable element protein, putative, MuDR
LOC_Os01g743903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g184402/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13670OsAffx.5954.5.S1_x_at4/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13670OsAffx.5954.4.S1_x_at3/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13670OsAffx.29791.1.S1_x_at1/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13680OsAffx.5954.1.S1_x_at6/113+7376898..7379928retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g13690OsAffx.12844.1.S1_at10/113+7383417..7386487expressed protein
LOC_Os03g13690Os.21222.1.S1_at1/113+7383417..7386487expressed protein
LOC_Os03g13700Os.27639.1.S1_x_at9/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13700OsAffx.8980.1.S1_at5/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35344.3.S1_x_at--362--17752Chr12:24048008..24048032 (25 bp)
ACCTGTTTCGCACGGTACTGCTCAG
LOC_Os12g39150
Os.35344.3.S1_x_at--877--341110Chr12:24048110..24048131 (22 bp)
CAGAGGACCTCGTTTGCCTTCGAGC
LOC_Os12g39150
Os.35344.3.S1_x_at--351--165107Chr12:12477846..12477870 (25 bp)
AGCGCCCCTAGCTTCGGAGCAGTGC
LOC_Os12g22150
Os.35344.3.S1_x_at--131--1061147Chr12:24048281..24048305 (25 bp)
TTCGAGCGCGTTCGCAGGCACGACC
LOC_Os12g39150
Os.35344.3.S1_x_at--629--215143Chr12:24048462..24048482 (21 bp)
ACACGGATTTGCAGCCGGGATCTTC
LOC_Os12g39150
Os.35344.3.S1_x_at--602--715151Chr12:24048500..24048524 (25 bp)
GTCTCACGCCGGTAGGACTGGTCCT
LOC_Os12g39150
Os.35344.3.S1_x_at--870--811159Chr12:24048514..24048538 (25 bp)
GGACTGGTCCTACTAGCCAGTTCTA
LOC_Os12g39150
Os.35344.3.S1_x_at--1080--699162Chr12:24048573..24048597 (25 bp)
GTACTAGGCTCCTCTCAGCTTGGAG
LOC_Os12g39150
Os.35344.3.S1_x_at--789--89150Chr12:24048607..24048631 (25 bp)
AGGCGCACACTCAGGAGCAGCCAGA
LOC_Os12g39150
Os.35344.3.S1_x_at--502--97157Chr12:24048619..24048643 (25 bp)
AGGAGCAGCCAGAGGTCACACCTGT
LOC_Os12g39150
Os.35344.3.S1_x_at--506--969157Chr12:24048634..24048658 (25 bp)
TCACACCTGTACAGGCAGGACGGGT
LOC_Os12g39150
Target Sequence 
ACCTGTTTCGCACGGTACTGCTCAGCCCAGAGGACCTCGTTTGCCTTCGAGCGCCCCTAGCTTCGGAGCAGTGCGNCCTA
CANCACCGGTTTCGCACGGACCTCGTCTGCCTTCGAGCGCGTTCGCAGGCACGACCGGCGCTTCCGCGAGCTCCGCAGGG
GCGTTCGCCACCTCTTCGGGCGCGTTCGCCAGCTCTTCCTCTCACGGAGCGTCGATCCCTCGNCCACACGGATTTGCAGC
CGGGATCTTCGGTACTGGGGCCTCTTCGTCTCACGCCGGTAGGACTGGTCCTACTAGCCAGTTCTACGACGACGACTTGC
ACGGTGCACACCACCACGACGTACTAGGCTCCTCTCAGCTTGGAGGANCTCCAGAGGCGCACACTCAGGAGCAGCCAGAG
GTCACACCTGTACAGGCAGGACGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35344.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis