Browse Element(s) Details


Os.21222.1.S1_at

Description gb:AK067040.1
DB_XREF= gi:32977058
TID=Os.21222.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089P11, full insert sequence.
FL= gb:AK067040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7074010/11expressed protein
LOC_Os02g344704/11expressed protein
LOC_Os05g232003/11expressed protein
LOC_Os03g136901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21222.1.S1_at--477--10371Chr01:41274034..41274058 (25 bp)
TTTTTATTTGTTCTTGAACTGATGT
LOC_Os01g70740
Os.21222.1.S1_at--897--6871Chr01:41274011..41274035 (25 bp)
GTATTTTTGTATGGGCTTGTGGGCT
LOC_Os01g70740
Os.21222.1.S1_at--627--4937Chr11:17581314..17581333 (20 bp)
GCTTGTGGGCTTGTAGATGGACCTA
NONE
Os.21222.1.S1_at--920--10838Chr11:17581314..17581335 (22 bp)
TTGTGGGCTTGTAGATGGACCTAGA
NONE
Os.21222.1.S1_at--685--3617Chr11:17581318..17581337 (20 bp)
CTTGTAGATGGACCTAGAATTTTTT
NONE
Os.21222.1.S1_at--832--8015Chr02:20649106..20649437 (25 bp)
GGAGTATGGGCTTGTAGATGGACCT
LOC_Os02g34470
Os.21222.1.S1_at--684--3611Chr01:41273934..41273958 (25 bp)
CTTGTAGATGGACCTGGAATCCTAG
LOC_Os01g70740
Os.21222.1.S1_at--375--6951Chr01:41273931..41273955 (25 bp)
GTAGATGGACCTGGAATCCTAGAAT
LOC_Os01g70740
Os.21222.1.S1_at--995--6231Chr01:41273928..41273952 (25 bp)
GATGGACCTGGAATCCTAGAATCTG
LOC_Os01g70740
Os.21222.1.S1_at--656--5831Chr01:41273924..41273948 (25 bp)
GACCTGGAATCCTAGAATCTGTTTG
LOC_Os01g70740
Os.21222.1.S1_at--825--3911Chr01:41273921..41273945 (25 bp)
CTGGAATCCTAGAATCTGTTTGGGC
NONE
Target Sequence 
TTTTTATTTGTTCTTGAACTGATGTATTTTTGTATGGGCTTGTGGGCTTGTGGGCTTGTAGATGGACCTAGAATTTTTTT
TTTNGGATGAAGGAGTATGGGCTTGTAGATGGACCTGGAATCCTAGAATCTGTTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis