Browse Element(s) Details


Os.21222.1.S1_s_at

Description gb:AK067040.1
DB_XREF= gi:32977058
TID=Os.21222.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089P11, full insert sequence.
FL= gb:AK067040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7074011/11expressed protein
LOC_Os02g3447011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21222.1.S1_s_at--1140--8932Chr02:20649091..20649115 (25 bp)
TGACTCCTGAAAGCTGGAGTAGGAA
LOC_Os02g34470
Os.21222.1.S1_s_at--6--5432Chr02:20649127..20649151 (25 bp)
GAACCAGCCTGACTCGACGAAAGAA
LOC_Os02g34470
Os.21222.1.S1_s_at--826--1992Chr02:20649169..20649193 (25 bp)
ACTCGGGGTAGAATCTGACTCCTGA
LOC_Os02g34470
Os.21222.1.S1_s_at--734--8512Chr02:20649201..20649225 (25 bp)
TGGGCAAATTCCCTGACGTGGGTAT
LOC_Os02g34470
Os.21222.1.S1_s_at--1043--5752Chr02:20649215..20649239 (25 bp)
GACGTGGGTATATTCCTGTGTTCTA
LOC_Os02g34470
Os.21222.1.S1_s_at--269--7872Chr02:20649221..20649245 (25 bp)
GGTATATTCCTGTGTTCTATTTTGA
LOC_Os02g34470
Os.21222.1.S1_s_at--381--9552Chr02:20649236..20649260 (25 bp)
TCTATTTTGAACCTGATTTGTGCGT
LOC_Os02g34470
Os.21222.1.S1_s_at--845--5432Chr02:20649244..20649268 (25 bp)
GAACCTGATTTGTGCGTGAACCTGA
LOC_Os02g34470
Os.21222.1.S1_s_at--266--6532Chr02:20649250..20649274 (25 bp)
GATTTGTGCGTGAACCTGAACCTAG
LOC_Os02g34470
Os.21222.1.S1_s_at--768--8692Chr02:20649254..20649278 (25 bp)
TGTGCGTGAACCTGAACCTAGACTC
LOC_Os02g34470
Os.21222.1.S1_s_at--431--10372Chr02:20649296..20649320 (25 bp)
TTTTATTTGTTCCTGGACTCCTGTG
LOC_Os02g34470
Target Sequence 
TGACTCCTGAAAGCTGGAGTAGGAAACAGTGTGGGGGAACCAGCCTGACTCGACGAAAGAAAAGCGGGATATAATCTAAC
TCGGGGTAGAATCTGACTCCTGACGTCGGCTGGGCAAATTCCCTGACGTGGGTATATTCCTGTGTTCTATTTTGAACCTG
ATTTGTGCGTGAACCTGAACCTAGACTCATGTGTTATTTTTTGTTTTTTATTTGTTCCTGGACTCCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21222.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis