Browse Element(s) Details


Os.6534.1.A1_at

Description gb:AK071082.1
DB_XREF= gi:32981105
TID=Os.6534.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076K18, full insert sequence.
FL= gb:AK071082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g344709/11expressed protein
LOC_Os01g707401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34440NANA2+20633348..20634574hypothetical protein
LOC_Os02g34450OsAffx.20329.1.S1_at4/112+20634927..20639339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g34460Os.12335.1.S1_at7/112+20643712..2064605340S ribosomal protein S10, putative, expressed
LOC_Os02g34470OsAffx.24570.1.A1_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_s_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.2.S1_at10/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.1.A1_at9/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_at4/112+20647029..20654715expressed protein
LOC_Os02g34490OsAffx.24571.1.S1_at11/112+20657590..20662944Leucine Rich Repeat family protein, expressed
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6534.1.A1_at--684--332Chr02:20648804..20648828 (25 bp)
ATAAACTACCTTACAAGTCTTGATT
LOC_Os02g34470
Os.6534.1.A1_at--111--2211Chr02:20648816..20648840 (25 bp)
ACAAGTCTTGATTAATGGAAGTGTT
LOC_Os02g34470
Os.6534.1.A1_at--358--6791Chr02:20648844..20648868 (25 bp)
GTTAGTAATTATTCAAGCTCCTTGG
LOC_Os02g34470
Os.6534.1.A1_at--1135--7011Chr02:20648848..20648872 (25 bp)
GTAATTATTCAAGCTCCTTGGGTAG
LOC_Os02g34470
Os.6534.1.A1_at--974--10491Chr02:20648855..20648879 (25 bp)
TTCAAGCTCCTTGGGTAGAATCTAA
LOC_Os02g34470
Os.6534.1.A1_at--231--2691Chr02:20648858..20648882 (25 bp)
AAGCTCCTTGGGTAGAATCTAATGA
LOC_Os02g34470
Os.6534.1.A1_at--595--3851NONE
CTGAACCTGGACTTCTGTGTTTTAT
NONE
Os.6534.1.A1_at--259--1771NONE
ACCTGGACTTCTGTGTTTTATGTGT
NONE
Os.6534.1.A1_at--536--771Chr02:20649373..20649394 (22 bp)
ATGTGTTTTTGTATTTGTTCCTGAA
LOC_Os02g34470
Os.6534.1.A1_at--291--6771Chr02:20649374..20649398 (25 bp)
GTTTTTGTATTTGTTCCTGAACTCA
LOC_Os02g34470
Os.6534.1.A1_at--186--6891Chr02:20649380..20649404 (25 bp)
GTATTTGTTCCTGAACTCATGTATT
LOC_Os02g34470
Target Sequence 
ATAAACTACCTTACAAGTCTTGATTAATGGAAGTGTTTATGTTAGTAATTATTCAAGCTCCTTGGGTAGAATCTAATGAA
ATTGAAATTGCATACAAGGTTGAGTTCATTGATAACCTGAAATCGACATTGATTGGAGGTGCCTTGACGTCCTAGAGGAA
GAGCCTTACGATTTATATTTTCTTGTATTTTGGCCTGAGAAAAAAATCTGTACAATCATGTTAGTGGGAGTGCTAGCTAA
AAATAGTGGAAAGAAAAGCGGGATAGAATCTGACTCGAGATAGAATATGACTCCTGAAAGCTGGAGTAGGAAACAGTGTG
GGGGAACCAGCCTGACTCGACGAAAGAAAAGCGGGATATAATCTGACTCGGGGTAGAATCTGACTCCTGACGTGGGCTGG
GCAAATTCCCTGACGTGGGTATATTCCTGTGTTCTATTTTGAACCTGATTTGTGCGTGAACCTGAACCTAGACTCCTGTG
TTATTTTTTGTTTTTTATTTGTTCCTGGACTCCTGTGTTTTTGAACCTGATTTGTATGTGAACCTGAACCTGGACTTCTG
TGTTTTATGTGTTTTTGTATTTGTTCCTGAACTCATGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6534.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis