Browse Element(s) Details


OsAffx.24570.1.A1_at

Description tigr:9630.m03282
TID=OsAffx.24570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3447011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34440NANA2+20633348..20634574hypothetical protein
LOC_Os02g34450OsAffx.20329.1.S1_at4/112+20634927..20639339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g34460Os.12335.1.S1_at7/112+20643712..2064605340S ribosomal protein S10, putative, expressed
LOC_Os02g34470OsAffx.24570.1.A1_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_s_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.2.S1_at10/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.1.A1_at9/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_at4/112+20647029..20654715expressed protein
LOC_Os02g34490OsAffx.24571.1.S1_at11/112+20657590..20662944Leucine Rich Repeat family protein, expressed
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24570.1.A1_at--755--4231Chr02:20650776..20650800 (25 bp)
CCGTCGTGGGTGTGGTTCCAGCAAC
LOC_Os02g34470
OsAffx.24570.1.A1_at--1091--7191Chr02:20650778..20650802 (25 bp)
GTCGTGGGTGTGGTTCCAGCAACAA
LOC_Os02g34470
OsAffx.24570.1.A1_at--348--9431Chr02:20650779..20650803 (25 bp)
TCGTGGGTGTGGTTCCAGCAACAAC
LOC_Os02g34470
OsAffx.24570.1.A1_at--806--3991Chr02:20650780..20650804 (25 bp)
CGTGGGTGTGGTTCCAGCAACAACG
LOC_Os02g34470
OsAffx.24570.1.A1_at--166--8631Chr02:20650782..20650806 (25 bp)
TGGGTGTGGTTCCAGCAACAACGCC
LOC_Os02g34470
OsAffx.24570.1.A1_at--741--7731Chr02:20650784..20650808 (25 bp)
GGTGTGGTTCCAGCAACAACGCCGA
LOC_Os02g34470
OsAffx.24570.1.A1_at--690--7471Chr02:20650785..20650809 (25 bp)
GTGTGGTTCCAGCAACAACGCCGAC
LOC_Os02g34470
OsAffx.24570.1.A1_at--279--7512Chr05:23003192..23003212 (21 bp)
GTGGTTCCAGCAACAACGCCGACTG
NONE
OsAffx.24570.1.A1_at--839--9293Chr02:20650872..20650896 (25 bp)
TCCGCTGTGGTCCTCACCCACATGC
LOC_Os02g34470
OsAffx.24570.1.A1_at--988--4491Chr02:20650974..20650998 (25 bp)
GCCGTCGCCACTCTGACCAAGAGAG
LOC_Os02g34470
OsAffx.24570.1.A1_at--326--4011Chr02:20650976..20651000 (25 bp)
CGTCGCCACTCTGACCAAGAGAGGG
LOC_Os02g34470
Target Sequence 
CCGTCGTGGGTGTGGTTCCAGCAACAACGCCGACTGGATCCCCCGCCTCCTGCCCGCCGCCGCCGCTTTGGTCCTCGCCC
GCATGCCGCCGTCGCCTCCGCTGTGGTCCTCACCCACATGCCGTTGTCGCCGCCGCTCTGGTCCTTGCCCGCATGCCGCC
GTCGCCACCGCTGTGGCCCTCGCCCGCATGCCGCCGTCGCCGTCGCCACTCTGACCAAGAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24570.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis