Browse Element(s) Details


Os.12335.1.S1_at

Description gb:AK066564.1
DB_XREF= gi:32976582
TID=Os.12335.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073I17, full insert sequence.
FL= gb:AK066564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g344607/1140S ribosomal protein S10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34430Os.52830.1.S1_at11/112+20617325..20620391protein kinase family protein, putative, expressed
LOC_Os02g34440NANA2+20633348..20634574hypothetical protein
LOC_Os02g34450OsAffx.20329.1.S1_at4/112+20634927..20639339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g34460Os.12335.1.S1_at7/112+20643712..2064605340S ribosomal protein S10, putative, expressed
LOC_Os02g34470OsAffx.24570.1.A1_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_s_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.2.S1_at10/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.1.A1_at9/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_at4/112+20647029..20654715expressed protein
LOC_Os02g34490OsAffx.24571.1.S1_at11/112+20657590..20662944Leucine Rich Repeat family protein, expressed
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12335.1.S1_at--203--9051Chr02:20645375..20645399 (25 bp)
TGCAGAATTCCAGCCATCATTCAGG
LOC_Os02g34460
Os.12335.1.S1_at--63--8091Chr02:20645835..20645859 (25 bp)
GGAGCTCAGGATTCTTGTCGCAGGA
LOC_Os02g34460
Os.12335.1.S1_at--623--6951Chr02:20645897..20645921 (25 bp)
GTAGAGATCAATGCGTAGCACCTAT
LOC_Os02g34460
Os.12335.1.S1_at--149--6331Chr02:20645937..20645961 (25 bp)
GATGCAAGTGTAATTCTCCTGGTGT
LOC_Os02g34460
Os.12335.1.S1_at--438--3151Chr02:20645948..20645972 (25 bp)
AATTCTCCTGGTGTTGATGGCTTGA
LOC_Os02g34460
Os.12335.1.S1_at--289--4931Chr02:20645967..20645991 (25 bp)
GCTTGAGAGTTTATCCCAAACCCTC
LOC_Os02g34460
Os.12335.1.S1_at--868--5591Chr02:20646012..20646036 (25 bp)
GAAATATCGTTCAGCTACTCAGCAA
LOC_Os02g34460
Os.12335.1.S1_at--1068--8851Chr02:20646083..20646107 (25 bp)
TGATGTATTAGTCTGCTTTTTTCCA
NONE
Os.12335.1.S1_at--564--4891Chr02:20646097..20646121 (25 bp)
GCTTTTTTCCATTGTGAGGCATAAC
NONE
Os.12335.1.S1_at--247--6211Chr02:20646112..20646136 (25 bp)
GAGGCATAACATACGTGCTGCATGT
NONE
Os.12335.1.S1_at--593--9091Chr02:20646127..20646151 (25 bp)
TGCTGCATGTTTCTTTAGGCGAAAT
NONE
Target Sequence 
TGCAGAATTCCAGCCATCATTCAGGAGTTCTGGTGGTAGACCTGGCTTTGGACGCGGTGGCGGCGGTGGTTTCGGTGCTG
GTCCAACCTCTTCCTCCATGGAGTGAAAGGAGCTCAGGATTCTTGTCGCAGGAGACATTTTAGTATTCAAGTTTTGCAGT
GGTGTTTGCAGTAGAGATCAATGCGTAGCACCTATNTTGAAACCTTAAGAGATGCAAGTGTAATTCTCCTGGTGTTGATG
GCTTGAGAGTTTATCCCAAACCCTCTGNAGAAGCCAATGCCAATGGAAATATCGTTCAGCTACTCAGCAATCAAGTTTTT
CCTCCCCAATTTNTNCCTGTCAAATTTCTTTATTTTTGATGTATTAGTCTGCTTTTTTCCATTGTGAGGCATAACATACG
TGCTGCATGTTTCTTTAGGCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis