Browse Element(s) Details


Os.52830.1.S1_at

Description gb:AK069491.1
DB_XREF= gi:32979515
TID=Os.52830.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025B09, full insert sequence.
FL= gb:AK069491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3443011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34419NANA2+20597283..20597556NA
LOC_Os02g34430Os.52830.1.S1_at11/112+20617325..20620391protein kinase family protein, putative, expressed
LOC_Os02g34440NANA2+20633348..20634574hypothetical protein
LOC_Os02g34450OsAffx.20329.1.S1_at4/112+20634927..20639339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g34460Os.12335.1.S1_at7/112+20643712..2064605340S ribosomal protein S10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52830.1.S1_at--370--5771Chr02:20619480..20619504 (25 bp)
GACGATGGTGAGCACCCGGAATTCT
LOC_Os02g34430
Os.52830.1.S1_at--64--7811Chr02:20619510..20619534 (25 bp)
GGTCGTTGATCCAAAGATGCCTCAG
LOC_Os02g34430
Os.52830.1.S1_at--777--5411Chr02:20619534..20619558 (25 bp)
GAAGCCTACCTCTAGAGCTCTGAAG
LOC_Os02g34430
Os.52830.1.S1_at--1069--2931Chr02:20619559..20619583 (25 bp)
AAGGCTTTGCTAGTGGCATTGCGGT
LOC_Os02g34430
Os.52830.1.S1_at--201--7751Chr02:20619581..20619605 (25 bp)
GGTGTGTAGACCCAGATGCTCGTAA
LOC_Os02g34430
Os.52830.1.S1_at--933--2811Chr02:20619641..20619665 (25 bp)
AAGTTGATGATTTCCCGTATAGAGA
LOC_Os02g34430
Os.52830.1.S1_at--749--3791Chr02:20620031..20620055 (25 bp)
CTCGAGCTCCGGTGCAGGCAAGAGT
LOC_Os02g34430
Os.52830.1.S1_at--365--1091Chr02:20620053..20620077 (25 bp)
AGTGGCTGACAAACCGGTGGCCATT
LOC_Os02g34430
Os.52830.1.S1_at--425--5071Chr02:20620103..20620127 (25 bp)
GCAGCGGTAACAACAGCGCGCGACA
LOC_Os02g34430
Os.52830.1.S1_at--983--2171Chr02:20620125..20620149 (25 bp)
ACAAACCGAACCCTTCAGATGGAGA
LOC_Os02g34430
Os.52830.1.S1_at--550--1731Chr02:20620253..20620277 (25 bp)
ACCATATCATCTGTACATGCCGAAG
LOC_Os02g34430
Target Sequence 
GACGATGGTGAGCACCCGGAATTCTGAGGGGGTCGTTGATCCAAAGATGCCTCAGAAGCCTACCTCTAGAGCTCTGAAGA
AGGCTTTGCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTT
GAAGTTGATGATTTCCCGTATAGAGATGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGGT
GGCCATTNNNGCNGGCGANCGTGAATCCGACAGCAGCGGTAACAACAGCGCGCGACAAACCGAACCCTTCAGATGGAGAA
ACCCAGAGNCCTAGGCATTTGTTCAGAAATTTTCACNTGATTTCTTGAACAAGAACAGTGTCCACCACTGAAGTTGCAAA
GTGCTCATTTGTTGCCTTCATCACCATATCATCTGTACATGCCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis