Browse Element(s) Details


Os.23140.1.S1_at

Description gb:CA998950
DB_XREF= gi:27576256
DB_XREF=S345S_C11
TID=Os.23140.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23140 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3450011/11expressed protein
LOC_Os04g478701/11PINHEAD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34460Os.12335.1.S1_at7/112+20643712..2064605340S ribosomal protein S10, putative, expressed
LOC_Os02g34470OsAffx.24570.1.A1_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_s_at11/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.2.S1_at10/112+20647029..20654715expressed protein
LOC_Os02g34470Os.6534.1.A1_at9/112+20647029..20654715expressed protein
LOC_Os02g34470Os.21222.1.S1_at4/112+20647029..20654715expressed protein
LOC_Os02g34490OsAffx.24571.1.S1_at11/112+20657590..20662944Leucine Rich Repeat family protein, expressed
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein
LOC_Os02g34510Os.5911.1.S1_at11/112+20679728..20681922Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23140.1.S1_at--762--6571Chr02:20673601..20673751 (25 bp)
GATTCTGAGGGTATCACTGTCATGG
LOC_Os02g34500
Os.23140.1.S1_at--1049--7692Chr02:20673766..20673786 (21 bp)
GGGTCTCTCACTGATATTGGTTTCA
LOC_Os02g34500
Os.23140.1.S1_at--430--10051Chr02:20675992..20676016 (25 bp)
TAGTCCGCTGCCCAAAGAAGGCTGA
LOC_Os02g34500
Os.23140.1.S1_at--95--9851Chr02:20676075..20676099 (25 bp)
TAAAGTAGATTGTGCCCTCGTCTCA
LOC_Os02g34500
Os.23140.1.S1_at--539--5491Chr02:20676102..20676126 (25 bp)
GAAAATGCTGTATCGGTCTTAGTTT
LOC_Os02g34500
Os.23140.1.S1_at--750--6791Chr02:20676123..20676147 (25 bp)
GTTTAGCGTTGGTACTCAGGTTGTT
LOC_Os02g34500
Os.23140.1.S1_at--19--4411Chr02:20676200..20676224 (25 bp)
GCCAAACAGCCGGACAGCACAGGAT
LOC_Os02g34500
Os.23140.1.S1_at--108--5131Chr02:20676216..20676240 (25 bp)
GCACAGGATGGATAGCTTTTTTCTT
LOC_Os02g34500
Os.23140.1.S1_at--83--7971Chr02:20676291..20676315 (25 bp)
GGATCAGTGTATGCTAGTTCCTACA
LOC_Os02g34500
Os.23140.1.S1_at--1065--6691Chr02:20676307..20676331 (25 bp)
GTTCCTACAGGCAAATGCTGCGTCT
LOC_Os02g34500
Os.23140.1.S1_at--386--811Chr02:20676339..20676363 (25 bp)
ATGGGTTTTGATCTCGTTGGCACGA
LOC_Os02g34500
Target Sequence 
GATTCTGAGGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGGTTTCATGGATGTCTGGGGGCA
GCCAACACAGGANGACTACGAGAAGTTCTTCTAGTCCGCTGCCCAAAGAAGGCTGAGATTGTTGAGGAACTTTACAAATA
AACCTGAGTAATCGGTAGCTTAGGCGAGAATAAGTAAAGTAGATTGTGCCCTCGTCTCAAAGAAAATGCTGTATCGGTCT
TAGTTTAGCGTTGGTACTCAGGTTGTTGGGGGTGAATGGTGGTTGTTTAATCAGAGGTGTAGTAGAAGACATGTGTAAGG
CCAAACAGCCGGACAGCACAGGATGGATAGCTTTTTTCTTGTTTCCCTTTTTGATATGTTGGTGTTCTNTTCTGTAGAAT
GATTCCGTTTGGATCAGTGTATGCTAGTTCCTACAGGCAAATGCTGCGTCTGGATCTAATGGGTTTTGATCTCGTTGGCA
CGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis