Browse Element(s) Details


OsAffx.12349.1.S1_at

Description tigr:9630.m03287
TID=OsAffx.12349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3453011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34500Os.23140.1.S1_at11/112+20670996..20676398expressed protein
LOC_Os02g34510Os.5911.1.S1_at11/112+20679728..20681922Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12349.1.S1_at--916--5931Chr02:20695771..20695795 (25 bp)
GAGCAGAGCATTTTCTATGGCCCTT
LOC_Os02g34530
OsAffx.12349.1.S1_at--407--4551Chr02:20695790..20696049 (25 bp)
GCCCTTTTGATGATGGAGCCTTCTT
LOC_Os02g34530
OsAffx.12349.1.S1_at--1055--10351Chr02:20696056..20696080 (25 bp)
TTTTATACGGAATTCCCTTCTGCCT
LOC_Os02g34530
OsAffx.12349.1.S1_at--928--10591Chr02:20696073..20696097 (25 bp)
TTCTGCCTTTAGTTGTGCCCATGAA
LOC_Os02g34530
OsAffx.12349.1.S1_at--382--5511Chr02:20696174..20696198 (25 bp)
GAAAATTCCCCACGGCTGATAAAAG
LOC_Os02g34530
OsAffx.12349.1.S1_at--950--2431Chr02:20696194..20696218 (25 bp)
AAAAGTATTGAGGTCTGCAGCCAGT
LOC_Os02g34530
OsAffx.12349.1.S1_at--272--5071Chr02:20696210..20696234 (25 bp)
GCAGCCAGTGCAAACCGTGATCTAG
LOC_Os02g34530
OsAffx.12349.1.S1_at--431--1371Chr02:20696292..20696316 (25 bp)
AGAGCTCAGAGCTGCCAACGATGAT
LOC_Os02g34530
OsAffx.12349.1.S1_at--656--3431Chr02:20696633..20696657 (25 bp)
CAGATTAGCCGTTTCCTTGAGGGAT
LOC_Os02g34530
OsAffx.12349.1.S1_at--242--3031Chr02:20696720..20696744 (25 bp)
AATGCGGTGTACATTCTCGTCTTTC
LOC_Os02g34530
OsAffx.12349.1.S1_at--452--9571Chr02:20696761..20696785 (25 bp)
TCTTCTCATGTATTTCTCTGGGCAA
LOC_Os02g34530
Target Sequence 
GAGCAGAGCATTTTCTATGGCCCTTTTGATGATGGAGCCTTCTTGGAAGATTTTATACGGAATTCCCTTCTGCCTTTAGT
TGTGCCCATGAACAGAGAGACTGTCAAGATGTTGAATGATGATGGGAGGAAAGTAGTTCTTATGATTTTACAGGATGATG
AATCCGATGAAAATTCCCCACGGCTGATAAAAGTATTGAGGTCTGCAGCCAGTGCAAACCGTGATCTAGTGTTTGGTTAT
GTAGGAGTCAACCAGTGGGAGGAATTCACTGAGACTTTTGATGTTAAGAGCTCAGAGCTGCCAACGATGATAGTCTGGGA
CAAAAAAGAGGAGTATGAAATAGTTGAGGGTTCAGAAAGGCTTGAAGAAGGTGACTATGGGTCCCAGATTAGCCGTTTCC
TTGAGGGATACAGGGCAGGAAGAACAATAAAGAAGAAAGTGGGCGATCGATCCCCGACCCTGCTTGGTGTGAATGCGGTG
TACATTCTCGTCTTTCTGGTTGCTGTTCTTGTTCTTCTCATGTATTTCTCTGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis