Browse Element(s) Details


OsAffx.17848.1.S1_at

Description tigr:9629.m02574
TID=OsAffx.17848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2698011/11Transposable element protein, putative, MuDR
LOC_Os01g268567/11Transposable element protein, putative, MuDR
LOC_Os02g345505/11Transposable element protein, putative, MuDR
LOC_Os09g224002/11hypothetical protein
LOC_Os08g249802/11Zinc knuckle family protein
LOC_Os06g255701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified
LOC_Os01g27000NANA1+15368998..15374622retrotransposon protein, putative, unclassified
LOC_Os01g27010OsAffx.7233.1.S1_at1/111+15383155..15385618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27020Os.4023.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27020OsAffx.23411.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.1.S1_at--766--4173Chr01:15362252..15362276 (25 bp)
CCCAAATGTCTGCAGATTTTATCGG
LOC_Os01g26980
OsAffx.17848.1.S1_at--291--2293Chr01:15362255..15362279 (25 bp)
AAATGTCTGCAGATTTTATCGGTCA
LOC_Os01g26980
OsAffx.17848.1.S1_at--1127--754Chr02:20708492..20708515 (24 bp)
ATGTCTGCAGATTTTATCGGTCAAG
LOC_Os02g34550
OsAffx.17848.1.S1_at--688--7174Chr02:20708493..20708517 (25 bp)
GTCTGCAGATTTTATCGGTCAAGGA
LOC_Os02g34550
OsAffx.17848.1.S1_at--1154--3814Chr02:20708495..20708519 (25 bp)
CTGCAGATTTTATCGGTCAAGGAGG
LOC_Os02g34550
OsAffx.17848.1.S1_at--756--3436Chr09:13529883..13529902 (20 bp)
CAGATTTTATCGGTCAAGGAGGGTT
LOC_Os09g22400
OsAffx.17848.1.S1_at--30--8877Chr09:13529885..13529908 (24 bp)
TATCGGTCAAGGAGGGTTTACGTCG
LOC_Os09g22400
OsAffx.17848.1.S1_at--112--2431Chr01:15363062..15363086 (25 bp)
AAAACGAGGTGGCACATCTATGACT
LOC_Os01g26980
OsAffx.17848.1.S1_at--898--1871Chr01:15363065..15363089 (25 bp)
ACGAGGTGGCACATCTATGACTACG
LOC_Os01g26980
OsAffx.17848.1.S1_at--163--6151Chr01:15363067..15363091 (25 bp)
GAGGTGGCACATCTATGACTACGAC
LOC_Os01g26980
OsAffx.17848.1.S1_at--417--1031Chr01:15363068..15363092 (25 bp)
AGGTGGCACATCTATGACTACGACT
LOC_Os01g26980
Target Sequence 
CCCAAATGTCTGCAGATTTTATCGGTCAAGGAGGGTTTACGTCGTTAGGCGGGCCTACTCAGCCGGTTCCACTGCATGCA
CCTACATATGGCACCAACCCATGGCAAGGACAATCCATGGATTACGGTGGGTCATTTCGCCCTGAACTAATGTCAGGGTT
TAGGCCTTACACTACATCGTACGGCGACATGTCCTGCTTCGGTGGAGGGTCGTCATCGGTACCCAATGAGCTTCGCACTT
CACAAACTGATGATGCACCCCAAGTGACACAGCCCATACAACCAGAGGTTGGCGAAGGAAACGACAATGACCCGCGTAGA
TCTAACCGTGAGCGCCATGAGCCGAACCGTCTGTCACTCTCAGGCCCGCGACATGCCGTAGGACAAAGGAAAAAAACTAC
AAAAAAACGAGGTGGCACATCTATGACTACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis