Browse Element(s) Details


OsAffx.17848.1.S1_x_at

Description tigr:9629.m02574
TID=OsAffx.17848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2698011/11Transposable element protein, putative, MuDR
LOC_Os01g268568/11Transposable element protein, putative, MuDR
LOC_Os09g224004/11hypothetical protein
LOC_Os05g320303/11hypothetical protein
LOC_Os02g345503/11Transposable element protein, putative, MuDR
LOC_Os04g119102/11Transposable element protein, putative, MuDR
LOC_Os08g249802/11Zinc knuckle family protein
LOC_Os06g255701/11hypothetical protein
LOC_Os08g249601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified
LOC_Os01g27000NANA1+15368998..15374622retrotransposon protein, putative, unclassified
LOC_Os01g27010OsAffx.7233.1.S1_at1/111+15383155..15385618retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27020Os.4023.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed
LOC_Os01g27020OsAffx.23411.1.S1_at11/111+15386316..15394420transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.1.S1_x_at--688--2292Chr01:15362076..15362100 (25 bp)
AAATGATTCGTCAAATGGCTCCCGA
LOC_Os01g26980
OsAffx.17848.1.S1_x_at--265--5095Chr05:18583515..18583621 (25 bp)
GCACCATTTGCAGGGACTAGCCAAG
LOC_Os05g32030
OsAffx.17848.1.S1_x_at--384--2993Chr01:15362256..15362280 (25 bp)
AATGTCTGCAGATTTTATCGGTCAA
LOC_Os01g26980
OsAffx.17848.1.S1_x_at--29--8877Chr09:13529885..13529908 (24 bp)
TATCGGTCAAGGAGGGTTTACGTCG
LOC_Os09g22400
OsAffx.17848.1.S1_x_at--70--10455Chr09:13530089..13530421 (25 bp)
TTACGGTGGGTCATTTCGCCCTGAA
LOC_Os09g22400
OsAffx.17848.1.S1_x_at--746--756Chr09:13530425..13530448 (24 bp)
ATGTCAGGGTTTAGGCCTTACACTA
LOC_Os09g22400
OsAffx.17848.1.S1_x_at--420--10493Chr01:15362825..15362849 (25 bp)
TTACACTACATCGTACGGCGACATG
LOC_Os01g26980
OsAffx.17848.1.S1_x_at--790--8912Chr01:15362885..15362909 (25 bp)
TGAGCTTCGCACTTCACAAACTGAT
LOC_Os01g26980
OsAffx.17848.1.S1_x_at--395--5631Chr01:15362924..15362948 (25 bp)
GACACAGCCCATACAACCAGAGGTT
LOC_Os01g26980
OsAffx.17848.1.S1_x_at--1125--6935Chr09:13530598..13530621 (24 bp)
GTAGATCTAACCGTGAGCGCCATGA
LOC_Os09g22400
OsAffx.17848.1.S1_x_at--162--6151Chr01:15363067..15363091 (25 bp)
GAGGTGGCACATCTATGACTACGAC
LOC_Os01g26980
Target Sequence 
AAATGATTCGTCAAATGGCTCCCGATGTGCCAACCTCACACTGGCAAGGAGGATTTGCACCATTTGCAGGGACTAGCCAA
GGTATCCCTACCATACCCCAAATGTCTGCAGATTTTATCGGTCAAGGAGGGTTTACGTCGTTAGGCGGGCCTACTCAGCC
GGTTCCACTGCATGCACCTACATATGGCACCAACCCATGGCAAGGACAATCCATGGATTACGGTGGGTCATTTCGCCCTG
AACTAATGTCAGGGTTTAGGCCTTACACTACATCGTACGGCGACATGTCCTGCTTCGGTGGAGGGTCGTCATCGGTACCC
AATGAGCTTCGCACTTCACAAACTGATGATGCACCCCAAGTGACACAGCCCATACAACCAGAGGTTGGCGAAGGAAACGA
CAATGACCCGCGTAGATCTAACCGTGAGCGCCATGAGCCGAACCGTCTGTCACTCTCAGGCCCGCGACATGCCGTAGGAC
AAAGGAAAAAAACTACAAAAAAACGAGGTGGCACATCTATGACTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis