Browse Element(s) Details


OsAffx.11218.1.S1_at

Description tigr:9629.m02572
TID=OsAffx.11218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2696011/11hypothetical protein
LOC_Os07g066308/11retrotransposon protein, putative, unclassified
LOC_Os01g268488/11hypothetical protein
LOC_Os01g119207/11retrotransposon protein, putative, unclassified
LOC_Os12g167503/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified
LOC_Os01g27000NANA1+15368998..15374622retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11218.1.S1_at--1112--8113Chr12:9602460..9602491 (25 bp)
GGACTGCCTGACAACATGATCCAGT
LOC_Os12g16750
OsAffx.11218.1.S1_at--232--2492Chr01:15345184..15345208 (25 bp)
AACATGATCCAGTCGGCAAAGAAGG
LOC_Os01g26960
OsAffx.11218.1.S1_at--408--8155Chr12:9602502..9602526 (25 bp)
GGAAATGTCCCAACTTGCTTACTTG
LOC_Os12g16750
OsAffx.11218.1.S1_at--909--9055Chr12:9602517..9602541 (25 bp)
TGCTTACTTGGTTAGGGATATTCGT
LOC_Os12g16750
OsAffx.11218.1.S1_at--63--5994Chr07:3235142..3235166 (25 bp)
GAGACATCAGGGTCAGCAAGATCCA
LOC_Os07g06630
OsAffx.11218.1.S1_at--581--5174Chr07:3235157..3235181 (25 bp)
GCAAGATCCAGCGTAGTCAGAATAA
LOC_Os07g06630
OsAffx.11218.1.S1_at--125--1414Chr12:9602594..9602618 (25 bp)
AGAATAATGTTAGCCATTTCCTGGC
NONE
OsAffx.11218.1.S1_at--92--215Chr12:9602609..9602633 (25 bp)
ATTTCCTGGCAAATAGAGGCCGAAC
NONE
OsAffx.11218.1.S1_at--71--6232Chr01:15345039..15345063 (25 bp)
GAGGCCGAACAAATTCTTGTTCTGT
LOC_Os01g26960
OsAffx.11218.1.S1_at--86--6732Chr01:15345021..15345045 (25 bp)
GTTCTGTTTTTTGGCCTGATGAAAG
LOC_Os01g26960
OsAffx.11218.1.S1_at--447--8975Chr12:9602661..9602685 (25 bp)
TGAAAGCTGTAATCTTATATCCCAA
NONE
Target Sequence 
GGACTGCCTGACAACATGATCCAGTCGGCAAAGAAGGAAATGTCCCAACTTGCTTACTTGGTTAGGGATATTCGTGAATT
GATGATGGGTGGCAGAGACATCAGGGTCAGCAAGATCCAGCGTAGTCAGAATAATGTTAGCCATTTCCTGGCAAATAGAG
GCCGAACAAATTCTTGTTCTGTTTTTTGGCCTGATGAAAGCTGTAATCTTATATCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis