Browse Element(s) Details


Os.34167.3.S1_x_at

Description gb:NM_193803.1
DB_XREF= gi:34914689
GEN=P0560B06.4
TID=Os.34167.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.4 (P0560B06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0560B06.4 (P0560B06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2685210/11expressed protein
LOC_Os01g2697010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26836Os.35344.18.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836Os.35344.3.S1_x_at9/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26836OsAffx.22940.5.S1_x_at3/111+15178394..15184450transposon protein, putative, Mutator sub-class
LOC_Os01g26840Os.18728.2.S1_x_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26840Os.18728.1.S1_at11/111+15186208..15193292RNA recognition motif family protein, expressed
LOC_Os01g26844OsAffx.11217.1.S1_at9/111+15196428..15196694hypothetical protein
LOC_Os01g26848OsAffx.11218.1.S1_at8/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.8338.1.S1_x_at2/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.22240.1.S1_x_at1/111+15199818..15201492hypothetical protein
LOC_Os01g26848OsAffx.10020.1.S1_x_at1/111+15199818..15201492hypothetical protein
LOC_Os01g26852Os.34167.3.S1_x_at10/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.2.S1_x_at9/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.2.S1_at9/111+15204518..15208140expressed protein
LOC_Os01g26852Os.34167.1.S1_at9/111+15204518..15208140expressed protein
LOC_Os01g26856OsAffx.17848.1.S1_x_at8/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.1.S1_at7/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.5.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.4.S1_x_at5/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.2.S1_x_at3/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.17848.3.S1_x_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856Os.54363.1.S1_at2/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26856OsAffx.11160.1.S1_s_at1/111+15210437..15220788Transposable element protein, putative, MuDR
LOC_Os01g26860OsAffx.7233.1.S1_at1/111+15228240..15230505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26864Os.4023.1.S1_at10/111+15231236..15239266transposon protein, putative, unclassified, expressed
LOC_Os01g26864OsAffx.23411.1.S1_at9/111+15231236..15239266transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34167.3.S1_x_at--1159--9932Chr01:15350247..15350271 (25 bp)
TACGATCTGCTGATTGTTGGGCCTG
LOC_Os01g26970
Os.34167.3.S1_x_at--461--6031NONE
GAGATGGCAGCAGGATTCTCCTTGT
NONE
Os.34167.3.S1_x_at--943--6572Chr01:15348204..15348228 (25 bp)
GATTCTCCTTGTGTGCCAATTGGTA
LOC_Os01g26970
Os.34167.3.S1_x_at--578--4372Chr01:15348190..15348214 (25 bp)
GCCAATTGGTAGGAGCCCTCGTACT
LOC_Os01g26970
Os.34167.3.S1_x_at--692--4272Chr01:15348174..15348198 (25 bp)
CCTCGTACTGATGTGCTCCTAAAAG
LOC_Os01g26970
Os.34167.3.S1_x_at--338--972Chr01:15348129..15348151 (23 bp)
AGGAGGAAGTGTTCTCCGGCTTGAT
LOC_Os01g26970
Os.34167.3.S1_x_at--285--4773Chr10:11989278..11989297 (20 bp)
GCTGCTTCTCTTGCAATTGCCATTA
NONE
Os.34167.3.S1_x_at--557--5972Chr01:15347237..15347261 (25 bp)
GAGACTACGTGCTCGTGTTTTTGTT
LOC_Os01g26970
Os.34167.3.S1_x_at--1119--7912Chr01:15347212..15347236 (25 bp)
GGTTGTGACAATCAGCCTCTATCTA
LOC_Os01g26970
Os.34167.3.S1_x_at--478--6812Chr01:15346958..15347063 (25 bp)
GTTTCAAGGCTTCACAGGGACTGAT
LOC_Os01g26970
Os.34167.3.S1_x_at--1049--5952Chr01:15346912..15346936 (25 bp)
GAGAATTCCAAAACTCGTGCTGAGA
LOC_Os01g26970
Target Sequence 
TACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGATTCTCCTTGTGTGCC
AATTGGTAGGAGCCCTCGTACTGATGTGCTCCTAAAAGCTGAAAATGCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGC
TTGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCT
CTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGGACTGA
TGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34167.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis