Browse Element(s) Details


OsAffx.17848.4.S1_x_at

Description tigr:9633.m01196
TID=OsAffx.17848.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1380011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g269807/11Transposable element protein, putative, MuDR
LOC_Os02g345506/11Transposable element protein, putative, MuDR
LOC_Os01g268565/11Transposable element protein, putative, MuDR
LOC_Os08g249804/11Zinc knuckle family protein
LOC_Os05g320303/11hypothetical protein
LOC_Os09g223902/11transposon protein, putative, unclassified
LOC_Os06g450301/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13760OsAffx.14675.1.S1_at11/115+7605086..7606135hypothetical protein
LOC_Os05g13770OsAffx.4329.1.S1_at11/115+7609492..7613200RNA polymerase Rpb7, N-terminal domain containing protein
LOC_Os05g13780OsAffx.14676.1.S1_x_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13780Os.19124.1.S1_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.4.S1_x_at--149--199Chr09:13522967..13522991 (25 bp)
ATTTCACACGGTCATTACCACTGGG
NONE
OsAffx.17848.4.S1_x_at--615--9971Chr05:7632893..7632916 (24 bp)
TACCACTGGGAACATCAGACAAAGT
LOC_Os05g13800
OsAffx.17848.4.S1_x_at--82--3291Chr05:7633148..7633170 (23 bp)
CAAAGTGCTAAGATCCTCGGGTGGA
LOC_Os05g13800
OsAffx.17848.4.S1_x_at--605--2794Chr09:13527044..13527068 (25 bp)
AAGAGGAGTGGCCTTACCCGTTGCT
LOC_Os09g22390
OsAffx.17848.4.S1_x_at--1022--1156Chr09:13527130..13527154 (25 bp)
AGTCTAGCTGTCCTGATACCGCGTA
LOC_Os09g22390
OsAffx.17848.4.S1_x_at--193--8416Chr05:7634281..7634305 (25 bp)
GGCCAGGCAATTGTACTTCCGGACC
LOC_Os05g13800
OsAffx.17848.4.S1_x_at--247--6511Chr05:7634338..7634362 (25 bp)
GATATGCATGTATTTTGCCACAGTA
LOC_Os05g13800
OsAffx.17848.4.S1_x_at--846--6977Chr09:13527616..13527640 (25 bp)
GTACGCTACCGGTGATACAGACGAT
NONE
OsAffx.17848.4.S1_x_at--239--2357Chr05:18581436..18581460 (25 bp)
AAAGAAACTCATGGCCCCACATTGA
LOC_Os05g32030
OsAffx.17848.4.S1_x_at--37--3316Chr05:18581470..18581650 (25 bp)
CACAGTTTGAGGTCATGTTCACCGG
LOC_Os05g32030
OsAffx.17848.4.S1_x_at--151--8671Chr05:7634641..7634665 (25 bp)
TGTGGACGCTAGACTAATCCTCCTT
LOC_Os05g13800
Target Sequence 
ATTTCACACGGTCATTACCACTGGGAACATCAGACAAAGTGCTAAGATCCTCGGGTGGAGGTCCCTCCAACACCTAGTCG
AAACTGGGGGTGATAAAAGGATCTATGTGCCAGATTTGGATTTGTTGAAGGCTGATATGGAAGAGGAGTGGCCTTACCCG
TTGCTTAGCAAAGAGATCAATGCACGACATCGTGCAAATAAGATATCTGATGAAAATTCTTGCTCTAGTCTAGCTGTCCT
GATACCGCGTACAGCCGGATGGTGGGGATGTGTCCATGCTCACGGGGCTGCCCCTAGCCGGCCAGGCAATTGTACTTCCG
GACCCTCAGAAGATTGGAGAGATGATATTGTATCACGATATGCATGTATTTTGCCACAGTACGCTACCGGTGATACAGAC
GATGATGAGGACAAAATATTTTTCTCTGAAAAAGAAACTCATGGCCCCACATTGACGTGGTTGTCACAGTTTGAGGTCAT
GTTCACCGGCTCGCACGGGAACACTGTGGACGCTAGACTAATCCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis