Browse Element(s) Details


Os.23798.1.S1_at

Description gb:AK109728.1
DB_XREF= gi:32994937
TID=Os.23798.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B10, full insert sequence.
FL= gb:AK109728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13750OsAffx.31069.2.S1_x_at1/115+7599334..7602194retrotransposon protein, putative, unclassified
LOC_Os05g13760OsAffx.14675.1.S1_at11/115+7605086..7606135hypothetical protein
LOC_Os05g13770OsAffx.4329.1.S1_at11/115+7609492..7613200RNA polymerase Rpb7, N-terminal domain containing protein
LOC_Os05g13780OsAffx.14676.1.S1_x_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13780Os.19124.1.S1_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23798.1.S1_at--160--4731Chr05:7625686..7625710 (25 bp)
GCTGGTTTGCTGCTCTCTGCATGAC
LOC_Os05g13790
Os.23798.1.S1_at--308--9491Chr05:7625671..7625695 (25 bp)
TCTGCATGACTTCATCGCCATATTT
LOC_Os05g13790
Os.23798.1.S1_at--125--10551Chr05:7625661..7625685 (25 bp)
TTCATCGCCATATTTCTGTAGCAAT
LOC_Os05g13790
Os.23798.1.S1_at--629--6431Chr05:7625585..7625609 (25 bp)
GATCATCTTCATATTTCCCTAGGAG
LOC_Os05g13790
Os.23798.1.S1_at--795--10651Chr05:7625571..7625595 (25 bp)
TTCCCTAGGAGTAGGAGTTCTCTTT
LOC_Os05g13790
Os.23798.1.S1_at--453--251Chr05:7625543..7625567 (25 bp)
ATATCTATTCATGTCTTTGTCACGG
LOC_Os05g13790
Os.23798.1.S1_at--613--7151Chr05:7625531..7625555 (25 bp)
GTCTTTGTCACGGAAGTACATGCAA
LOC_Os05g13790
Os.23798.1.S1_at--587--5971Chr05:7625497..7625521 (25 bp)
GAGAACTGCTGATTCGTGCAGATAC
LOC_Os05g13790
Os.23798.1.S1_at--182--6571Chr05:7625487..7625511 (25 bp)
GATTCGTGCAGATACAATTCAGGGA
LOC_Os05g13790
Os.23798.1.S1_at--1086--3451Chr05:7625468..7625492 (25 bp)
CAGGGAGTAGTTTGTATTCCTAACA
LOC_Os05g13790
Os.23798.1.S1_at--333--9711Chr05:7625436..7625460 (25 bp)
TCAAGCATGGAAGGAAGTGTCAGAA
LOC_Os05g13790
Target Sequence 
GCTGGTTTGCTGCTCTCTGCATGACTTCATCGCCATATTTCTGTAGCAATATAACAATAAGATGTGGACTATTGCAGNTT
AGTTAAATAGATATACAAGTAGATCATCTTCATATTTCCCTAGGAGTAGGAGTTCTCTTTGAAATATCTATTCATGTCTT
TGTCACGGAAGTACATGCAATACAATAGTGAGAACTGCTGATTCGTGCAGATACAATTCAGGGAGTAGTTTGTATTCCTA
ACAATAATGTTCAAGCATGGAAGGAAGTGTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis