Browse Element(s) Details


OsAffx.4329.1.S1_at

Description tigr:9633.m01194
TID=OsAffx.4329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1377011/11RNA polymerase Rpb7, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13730Os.40360.1.S1_at5/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40855.5.S1_x_at4/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40360.1.S1_x_at3/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.2358.1.S1_at2/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13740NANA5+7591628..7595475retrotransposon protein, putative, unclassified
LOC_Os05g13750OsAffx.31069.2.S1_x_at1/115+7599334..7602194retrotransposon protein, putative, unclassified
LOC_Os05g13760OsAffx.14675.1.S1_at11/115+7605086..7606135hypothetical protein
LOC_Os05g13770OsAffx.4329.1.S1_at11/115+7609492..7613200RNA polymerase Rpb7, N-terminal domain containing protein
LOC_Os05g13780OsAffx.14676.1.S1_x_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13780Os.19124.1.S1_at11/115+7613502..7619875chromomethylase 2, putative, expressed
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4329.1.S1_at--946--1631Chr05:7612608..7612632 (25 bp)
AGCGTGTGATCATCCATCGAGATAT
LOC_Os05g13770
OsAffx.4329.1.S1_at--498--1351Chr05:7612712..7612736 (25 bp)
AGAGTTGATGCCTACACCACACATG
LOC_Os05g13770
OsAffx.4329.1.S1_at--687--2891Chr05:7612792..7612816 (25 bp)
CAAGGGTACCGATGTTTTCGCATTT
LOC_Os05g13770
OsAffx.4329.1.S1_at--557--7511Chr05:7612872..7612896 (25 bp)
GTGGAGAACCTCAAGCGCTAGCAGA
LOC_Os05g13770
OsAffx.4329.1.S1_at--1143--4651Chr05:7612910..7612934 (25 bp)
GCGTGGCAACGCAGTTCAATCATAA
LOC_Os05g13770
OsAffx.4329.1.S1_at--94--2711Chr05:7612991..7613015 (25 bp)
AAGCTTGGGCTTCTATGTTCACATT
LOC_Os05g13770
OsAffx.4329.1.S1_at--990--731Chr05:7613005..7613029 (25 bp)
ATGTTCACATTCATCGCCCAAGGTG
LOC_Os05g13770
OsAffx.4329.1.S1_at--946--3211Chr05:7613023..7613047 (25 bp)
CAAGGTGAGGCCTAGCATGCGCTTA
LOC_Os05g13770
OsAffx.4329.1.S1_at--754--4551Chr05:7613041..7613065 (25 bp)
GCGCTTAGTGATGCAATACCTGGAA
LOC_Os05g13770
OsAffx.4329.1.S1_at--387--8131Chr05:7613083..7613107 (25 bp)
GGACTTCGCATTTAGTTTCTTCAGC
LOC_Os05g13770
OsAffx.4329.1.S1_at--983--8811Chr05:7613143..7613167 (25 bp)
TGTTGTATCAAATCCCTCTGTAGCA
LOC_Os05g13770
Target Sequence 
AGCGTGTGATCATCCATCGAGATATCAAGTCAAGCAACGTATTGCTTGACGAGGAAATGAATGGAAGGTTGGGTGATTTT
GGCCTTGCAAGATTACATGATCACAGAGTTGATGCCTACACCACACATGTAGCAGGCACATATGGTTACATTGCTCCAGA
GCTAGCTAGGCTTGGAAAATCAACCAAGGGTACCGATGTTTTCGCATTTGGGGTGTTCATGATGGAGGCTGCACGTGGAA
ATAGGCCAATTGAGGTGAATTCCTGTGGAGAACCTCAAGCGCTAGCAGATCATGTGCTCAATGCGTGGCAACGCAGTTCA
ATCATAAACTCCATAGATCCAAGTCTGGAAGATCACGTTGCAGAGGAGGTAGTATTAGTTTTAAAGCTTGGGCTTCTATG
TTCACATTCATCGCCCAAGGTGAGGCCTAGCATGCGCTTAGTGATGCAATACCTGGAAAGGGAAGCAACGCTCCAGGACT
TCGCATTTAGTTTCTTCAGCATCAATGAAGCTAATAATGAAGTTTATGGTCAGCATGTTGTATCAAATCCCTCTGTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis