Browse Element(s) Details


Os.40855.5.S1_x_at

Description gb:NM_185658.1
DB_XREF= gi:34898401
TID=Os.40855.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1111C09.16 (B1111C09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0502011/11expressed protein
LOC_Os02g4085011/11hypothetical protein
LOC_Os07g2477011/11hypothetical protein
LOC_Os07g3636011/11F-box domain containing protein, expressed
LOC_Os02g4036011/11retrotransposon protein, putative, unclassified
LOC_Os06g0711011/11hypothetical protein
LOC_Os04g2090011/11hypothetical protein
LOC_Os07g1609011/11hypothetical protein
LOC_Os12g3367011/11hypothetical protein
LOC_Os08g0599010/11hypothetical protein
LOC_Os03g5185010/11hypothetical protein
LOC_Os02g355208/11hypothetical protein
LOC_Os01g212908/11hypothetical protein
LOC_Os08g363408/11K+ potassium transporter family protein, expressed
LOC_Os07g482107/11hypothetical protein
LOC_Os02g268206/11hypothetical protein
LOC_Os11g472506/11hypothetical protein
LOC_Os06g326306/11hypothetical protein
LOC_Os01g226204/11hypothetical protein
LOC_Os05g137304/11Zinc knuckle family protein
LOC_Os05g207603/11hypothetical protein
LOC_Os09g253003/11hypothetical protein
LOC_Os08g327303/11hypothetical protein
LOC_Os08g061503/11hypothetical protein
LOC_Os12g137503/11hypothetical protein
LOC_Os09g199903/11hypothetical protein
LOC_Os08g279803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g090103/11hypothetical protein
LOC_Os04g261403/11hypothetical protein
LOC_Os03g026303/11hypothetical protein
LOC_Os02g567303/11hypothetical protein
LOC_Os01g354303/11hypothetical protein
LOC_Os07g127403/11hypothetical protein
LOC_Os04g187803/11hypothetical protein
LOC_Os06g429003/11hypothetical protein
LOC_Os04g194903/11hypothetical protein
LOC_Os06g214303/11hypothetical protein
LOC_Os05g071002/11hypothetical protein
LOC_Os12g273202/11hypothetical protein
LOC_Os10g029202/11Cytochrome b561 family protein, expressed
LOC_Os12g288902/11hypothetical protein
LOC_Os04g250702/11hypothetical protein
LOC_Os12g338202/11hypothetical protein
LOC_Os06g258301/11retrotransposon protein, putative, unclassified
LOC_Os09g043391/11expressed protein
LOC_Os08g419301/11hypothetical protein
LOC_Os12g201691/11hypothetical protein
LOC_Os08g136001/11hypothetical protein
LOC_Os04g149801/11hypothetical protein
LOC_Os08g085301/11hypothetical protein
LOC_Os04g065601/11hypothetical protein
LOC_Os11g242201/11hypothetical protein
LOC_Os09g092901/11expressed protein
LOC_Os09g147501/11hypothetical protein
LOC_Os08g284901/11hypothetical protein
LOC_Os06g202301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04980OsAffx.8980.1.S1_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04980Os.27639.1.S1_x_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04990OsAffx.24103.1.S1_at11/112+2367921..2368406hypothetical protein
LOC_Os02g05000Os.52587.1.S1_at11/112+2369614..2371346expressed protein
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05040Os.53048.1.S1_at11/112+2397459..2404948cyclin, putative, expressed
LOC_Os02g05050NANA2+2406655..2407017Auxin responsive protein
LOC_Os02g05060OsAffx.2511.1.S1_at11/112+2408522..2409353Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40855.5.S1_x_at--1114--42347Chr12:17119795..17119819 (25 bp)
CCGTTGATGGGCATCGTCATCTTCA
NONE
Os.40855.5.S1_x_at--936--40348Chr12:17119796..17119820 (25 bp)
CGTTGATGGGCATCGTCATCTTCAC
NONE
Os.40855.5.S1_x_at--663--665120Chr12:17119797..17119821 (25 bp)
GTTGATGGGCATCGTCATCTTCACC
NONE
Os.40855.5.S1_x_at--659--1077124Chr12:17119798..17119822 (25 bp)
TTGATGGGCATCGTCATCTTCACCG
NONE
Os.40855.5.S1_x_at--829--88783Chr12:17119799..17119823 (25 bp)
TGATGGGCATCGTCATCTTCACCGC
NONE
Os.40855.5.S1_x_at--1120--62581Chr12:17119800..17119824 (25 bp)
GATGGGCATCGTCATCTTCACCGCC
NONE
Os.40855.5.S1_x_at--38--8181Chr12:17119801..17119825 (25 bp)
ATGGGCATCGTCATCTTCACCGCCG
NONE
Os.40855.5.S1_x_at--399--86585Chr12:17119802..17119826 (25 bp)
TGGGCATCGTCATCTTCACCGCCGG
NONE
Os.40855.5.S1_x_at--1112--47191Chr12:7854069..7854182 (25 bp)
GCTGTTGGGCGTCTTCGCTTTCACC
NONE
Os.40855.5.S1_x_at--187--38787Chr12:7854070..7854183 (25 bp)
CTGTTGGGCGTCTTCGCTTTCACCG
NONE
Os.40855.5.S1_x_at--861--861136Chr12:13165747..13165861 (25 bp)
TGGGCGTCTTCGCTTTCACCGTCGA
NONE
Target Sequence 
CCGTTGATGGGCATCGTCATCTTCACCGCCGGCCTGCCTCCGTCGCCGCCGACTGGTGCCTCCGCCTACACGGCTGGCCT
ATTATGCCGCCGCTGTTGGGCGTCTTCGCTTTCACCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40855.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis