Browse Element(s) Details


Os.27639.1.S1_x_at

Description gb:AK070709.1
DB_XREF= gi:32980733
TID=Os.27639.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0073L01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062I06, full insert sequence.
FL= gb:AK070709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3761010/11transposon protein, putative, unclassified, expressed
LOC_Os07g3600010/11transposon protein, putative, unclassified
LOC_Os04g5375010/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g155709/11transposon protein, putative, unclassified
LOC_Os03g242609/11transposon protein, putative, unclassified
LOC_Os07g148109/11transposon protein, putative, unclassified
LOC_Os04g303809/11transposon protein, putative, unclassified, expressed
LOC_Os05g050509/11transposon protein, putative, unclassified
LOC_Os03g137009/11transposon protein, putative, unclassified
LOC_Os01g180009/11transposon protein, putative, unclassified
LOC_Os09g129309/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g491009/11transposon protein, putative, unclassified
LOC_Os02g129708/11transposon protein, putative, unclassified, expressed
LOC_Os06g485808/11transposon protein, putative, unclassified
LOC_Os04g082108/11transposon protein, putative, unclassified
LOC_Os04g542808/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g537908/11transposon protein, putative, unclassified
LOC_Os12g197608/11transposon protein, putative, unclassified
LOC_Os01g450508/11transposon protein, putative, unclassified
LOC_Os09g146908/11transposon protein, putative, unclassified
LOC_Os07g443908/11transposon protein, putative, unclassified
LOC_Os05g072908/11transposon protein, putative, unclassified
LOC_Os11g365906/11transposon protein, putative, unclassified
LOC_Os11g404606/11transposon protein, putative, unclassified
LOC_Os11g377105/11transposon protein, putative, unclassified
LOC_Os12g251905/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g049805/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g083304/11transposon protein, putative, unclassified
LOC_Os10g219504/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g224703/11transposon protein, putative, unclassified
LOC_Os12g382803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g249103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g245003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g255602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g113402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g474702/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g037801/11transposon protein, putative, unclassified
LOC_Os12g141201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g444001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27639.1.S1_x_at--154--79533Chr12:23474051..23474075 (25 bp)
GGATTTGGGCATAACAGATGACTTT
LOC_Os12g38280
Os.27639.1.S1_x_at--1003--38738Chr12:23474085..23474109 (25 bp)
CTGGTTATGGCCTCATTGCCAAAGC
LOC_Os12g38280
Os.27639.1.S1_x_at--569--84331Chr12:23474093..23474117 (25 bp)
GGCCTCATTGCCAAAGCAGTTTGAC
LOC_Os12g38280
Os.27639.1.S1_x_at--533--14527Chr12:12681211..12681235 (25 bp)
AGAAGCTCATTGCTAATTGTGTGCA
LOC_Os12g22470
Os.27639.1.S1_x_at--672--78322Chr09:8720908..8720932 (25 bp)
GGTAAACAGTCTCAGCATCTGCCTC
LOC_Os09g14690
Os.27639.1.S1_x_at--710--4723Chr12:12681340..12681364 (25 bp)
ATCTGCCTCAGCAACAACAGTTCGC
LOC_Os12g22470
Os.27639.1.S1_x_at--622--24930Chr12:12681355..12681379 (25 bp)
AACAGTTCGCTGTTGAGAAAGATCA
LOC_Os12g22470
Os.27639.1.S1_x_at--516--55723Chr09:8720955..8720979 (25 bp)
GAAAGATCAATGTCTCCACTGCAAG
LOC_Os09g14690
Os.27639.1.S1_x_at--448--51724Chr11:21790226..21790250 (25 bp)
GCAAGAAGACAGGACACTACAAGAA
LOC_Os11g37710
Os.27639.1.S1_x_at--126--5574Chr04:31808923..31808947 (25 bp)
GAAAGATTGTCCTGATTTTTTGAAA
LOC_Os04g53750
Os.27639.1.S1_x_at--40--851NONE
ATGGCAAAGAAAGATTCTCCTCAAG
NONE
Target Sequence 
GGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCA
ACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAAAGAA
TCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAGAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCA
GCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAAAG
ATTGTCCTGATTTTTTGAAAATGATCATGGCAAAGAAAGATTCTCCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27639.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis