Browse Element(s) Details


OsAffx.32106.2.S1_x_at

Description tigr:9640.m03897
TID=OsAffx.32106.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3989011/11expressed protein
LOC_Os01g377005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32106.2.S1_x_at--932--5271Chr12:24617236..24617260 (25 bp)
GAATGTGATCTTTGATACCCAGGAT
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--131--6612Chr12:24617330..24617354 (25 bp)
GATTGGTTCATTGACGTTGTGCCCA
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--231--1612Chr12:24617412..24617436 (25 bp)
AGCTGATGAGCTCCAATGTGACTTA
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--286--1231Chr12:24617453..24617477 (25 bp)
AGTTCTACCATTACCAAGGCATCCT
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--61--2932Chr12:24617468..24617492 (25 bp)
AAGGCATCCTTTTCGTCGAATGCTT
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--501--5612Chr12:24617524..24617548 (25 bp)
GACAATGGCCAACCACAGTGCTGAA
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--1069--2612Chr12:24617547..24617571 (25 bp)
AACCGAGCAAGCACTTCGTGGTGGA
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--502--1051Chr12:24618760..24618784 (25 bp)
AGGTGTCCATCCAATTTATGCCCAA
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--593--4552Chr12:24618779..24618803 (25 bp)
GCCCAACGAGGAGGAGATACCCAGC
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--50--7831Chr12:24618840..24618864 (25 bp)
GGTCAGTTTGTAGGCGTGGACCTTT
LOC_Os12g39890
OsAffx.32106.2.S1_x_at--716--4651Chr12:24618853..24618877 (25 bp)
GCGTGGACCTTTGGGTTGATTCACA
LOC_Os12g39890
Target Sequence 
GAATGTGATCTTTGATACCCAGGATGGGCCCGATATGGATGAGTATGAGTTCTGGCCTGATTTGGATAATGAAGGAGGCG
ACTTCGTATTTGAAGATTGGTTCATTGACGTTGTGCCCAAGAAAAAGATGCACGATGGTGTTGCAATGGAGAAGAAGCGA
GGCAGTAAAATTGGCAAGCTGATGAGCTCCAATGTGACTTATGGCATGGGACGACCCAGTTCTACCATTACCAAGGCATC
CTTTTCGTCGAATGCTTCTTACCCGCAGGGAGGTGACCTGTGGCAGGGGACAATGGCCAACCACAGTGCTGAACCGAGCA
AGCACTTCGTGGTGGAGTCCTCCAATATCAGCGAGCAGAGCAAGGAGGTGTCCATCCAATTTATGCCCAACGAGGAGGAG
ATACCCAGCGAGGAGAAGATGCCGAGCGACAAAGAAAATGGTGATGGTCAGTTTGTAGGCGTGGACCTTTGGGTTGATTC
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32106.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis