Browse Element(s) Details


Os.5685.1.S1_at

Description gb:AK073627.1
DB_XREF= gi:32983650
TID=Os.5685.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051K07, full insert sequence.
FL= gb:AK104808.1 gb:AK073627.1 gb:AK104107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g398609/11Adenine phosphoribosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5685.1.S1_at--672--6411Chr12:24604849..24604873 (25 bp)
GATCTAATCGCTACAGGTGGAACCT
LOC_Os12g39860
Os.5685.1.S1_at--931--8491Chr12:24604832..24604856 (25 bp)
TGGAACCTTATCTGCAGCCGTTAAA
LOC_Os12g39860
Os.5685.1.S1_at--889--4391Chr12:24604389..24604840 (25 bp)
GCCGTTAAACTTATTGAGCGTGCTG
LOC_Os12g39860
Os.5685.1.S1_at--191--6111Chr12:24604350..24604374 (25 bp)
GAGTGCGCATGTGTCATTGAACTAC
LOC_Os12g39860
Os.5685.1.S1_at--588--4451Chr12:24603752..24603776 (25 bp)
GCCTCTCAAGTTGTCCCTATTAATA
LOC_Os12g39860
Os.5685.1.S1_at--431--3111Chr12:24603731..24603755 (25 bp)
AATATCAGTGTCCTTCTCGAAGCAT
LOC_Os12g39860
Os.5685.1.S1_at--73--1491Chr12:24603700..24603724 (25 bp)
AGCAACTAAGATATCGGTCGTGACA
LOC_Os12g39860
Os.5685.1.S1_at--668--10791Chr12:24603667..24603691 (25 bp)
TTGTTCTATCCAGTGCTCTGCAATA
LOC_Os12g39860
Os.5685.1.S1_at--622--8531Chr12:24603426..24603450 (25 bp)
TGGACTTCTGCATTGACTTGTGGAG
LOC_Os12g39860
Os.5685.1.S1_at--115--6351NONE
GATGCTGCAATTCAAGGTGCCCATG
NONE
Os.5685.1.S1_at--468--7291NONE
GTGCCCATGTTTGTGGTACTTCATT
NONE
Target Sequence 
GATCTAATCGCTACAGGTGGAACCTTATCTGCAGCCGTTAAACTTATTGAGCGTGCTGGAGCAGAGGTTGTTGAGTGCGC
ATGTGTCATTGAACTACCAGAACTGAAGGGTCGGGACAAGCTGGGGAACAAGCCAGTTTTTGTCCTTGTGAAGGCAGACT
AAGCGGAATGAAACAACTAAGGGCCTCTCAAGTTGTCCCTATTAATATCAGTGTCCTTCTCGAAGCATGTTGGAAGCAAC
TAAGATATCGGTCGTGACAATATTAGCTTGTTCTATCCAGTGCTCTGCAATAAAAGTCTCATCTTTAAATTTGTAGGCAC
ATGAGTTATTTGGGAATTCGGACTTGAATGATCCTTGTAATACATCAAAACACGGCATAATTTTTTTTAAAGGAGTGCCA
ATTATTCATGGGGAATGAGAATCACCTATTTTGGANNTTTGTTGTTCTGCTTGCNTATCANNANNNNANNNNNNCTTTTT
CCTGTACAACTTTNCGCTGACAATTTGTGATCATGGACTTCTGCATTGACTTGTGGAGATCATGATGCTGCAATTCAAGG
TGCCCATGTTTGTGGTACTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis