Browse Element(s) Details


Os.51953.1.S1_at

Description gb:AK064396.1
DB_XREF= gi:32974414
TID=Os.51953.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G07, full insert sequence.
FL= gb:AK064396.1 gb:AK101602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3983011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39810NANA12+24571759..24572629hypothetical protein
LOC_Os12g39820NANA12+24575401..24575826retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51953.1.S1_at--294--1311Chr12:24587186..24587210 (25 bp)
AGATGAGCAACCTTTCTCCATCTTG
LOC_Os12g39830
Os.51953.1.S1_at--822--971Chr12:24586851..24586875 (25 bp)
AGGAGAATGTACATGCCTGCTACAG
LOC_Os12g39830
Os.51953.1.S1_at--45--5851Chr12:24586782..24586806 (25 bp)
GACCATTGCAATGTTCAGACTCCAA
LOC_Os12g39830
Os.51953.1.S1_at--965--5711Chr12:24586765..24586789 (25 bp)
GACTCCAATGAGATTACCACCACCA
LOC_Os12g39830
Os.51953.1.S1_at--629--8811Chr12:24586721..24586745 (25 bp)
TGTTGATGATGTTACCGACACCGCC
LOC_Os12g39830
Os.51953.1.S1_at--637--5871Chr12:24586657..24586681 (25 bp)
GAGCCGCCGCGAATCCGTTGAGGAA
LOC_Os12g39830
Os.51953.1.S1_at--682--6651Chr12:24586641..24586665 (25 bp)
GTTGAGGAAGCTAGCACCACCAGGG
LOC_Os12g39830
Os.51953.1.S1_at--740--1691Chr12:24586626..24586650 (25 bp)
ACCACCAGGGACACACAATTTTTAG
LOC_Os12g39830
Os.51953.1.S1_at--602--7571Chr12:24586588..24586612 (25 bp)
GGGCGCTTGGTTTGGATCTTCTCCT
LOC_Os12g39830
Os.51953.1.S1_at--181--8331Chr12:24586404..24586428 (25 bp)
GGCTGAGTGAGCTCTCCTAAGGAGA
LOC_Os12g39830
Os.51953.1.S1_at--678--3591Chr12:24586366..24586390 (25 bp)
TACTTGAAGCCCCAAATTCCAGTGC
LOC_Os12g39830
Target Sequence 
AGATGAGCAACCTTTCTCCATCTTGTCTTATTGACAAGGAGAATGTACATGCCTGCTACAGTATGATGGTTGGGGACATG
AACAACAACAGGAGGAGCAGCAAGCGACCATTGCAATGTTCAGACTCCAATGAGATTACCACCACCAGTACATATGATTC
TGTTCTTGTTGATGATGTTACCGACACCGCCGCCTTCGCTGCGACGGCGATGAATAAGCGGCTCAGGCCAGAGCCGCCGC
GAATCCGTTGAGGAAGCTAGCACCACCAGGGACACACAATTTTTAGTCAGATGTCTAGGGGGCGCTTGGTTTGGATCTTC
TCCTTTTCCCCTTCTTTTTTTCTCCCTTTTTTTGACATAAGTTTCCAAAATATTTATTAGGTTCTTTGAGCCATTGCCAT
TGGTTGGCATTTGGCAAATGTTGTTGGATTGGATTGGTTTGGTTTGTGAGAAGGAGAAGAGATAATGAACAAAGGAAAAA
AGGGGCTGAGTGAGCTCTCCTAAGGAGAGGAGAGCTTGAGTTACTTGAAGCCCCAAATTCCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis