Browse Element(s) Details


Os.15671.1.A1_at

Description gb:AK058919.1
DB_XREF= gi:32968937
TID=Os.15671.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B07, full insert sequence.
FL= gb:AK058919.1 gb:AK060557.1 gb:AK069966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3984011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39810NANA12+24571759..24572629hypothetical protein
LOC_Os12g39820NANA12+24575401..24575826retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15671.1.A1_at--977--7331Chr12:24594655..24594960 (25 bp)
GTGAAGCCCGAATATATTTGCCAGA
LOC_Os12g39840
Os.15671.1.A1_at--162--1351Chr12:24594745..24594769 (25 bp)
AGAGATTCCTGCCTAGTTGGGCTCC
LOC_Os12g39840
Os.15671.1.A1_at--33--8651Chr12:24594728..24594752 (25 bp)
TGGGCTCCTCACATTGGCATAATCA
LOC_Os12g39840
Os.15671.1.A1_at--544--7431Chr12:24594676..24594700 (25 bp)
GTGTTTCTATCTAGCATGGCATTGG
LOC_Os12g39840
Os.15671.1.A1_at--200--5211Chr12:24594643..24594667 (25 bp)
GAATTCTGCCAGATACTTACAATTT
LOC_Os12g39840
Os.15671.1.A1_at--641--10191Chr12:24594610..24594634 (25 bp)
TATATCCTTGACTCAATTCCTGATG
LOC_Os12g39840
Os.15671.1.A1_at--750--91Chr12:24594595..24594619 (25 bp)
ATTCCTGATGTTTCTGTATGTCCTT
LOC_Os12g39840
Os.15671.1.A1_at--468--6911Chr12:24594580..24594604 (25 bp)
GTATGTCCTTCCTACTCTTAAGAGT
LOC_Os12g39840
Os.15671.1.A1_at--140--1491Chr12:24594498..24594522 (25 bp)
AGCAAGTTTCCACCGATCTCAAGAC
LOC_Os12g39840
Os.15671.1.A1_at--901--91Chr12:24594436..24594460 (25 bp)
ATTCTGATTGGTCACATCTCCTGTA
LOC_Os12g39840
Os.15671.1.A1_at--815--4271Chr12:24594417..24594441 (25 bp)
CCTGTACCAACTATTCTGTCTGCAA
LOC_Os12g39840
Target Sequence 
GTGAAGCCCGAATATATTTGCCAGAAAGACAGCAGAGATTCCTGCCTAGTTGGGCTCCTCACATTGGCATAATCACATAA
TCCAAACTTGCTTCAGATAATAGTGTTTCTATCTAGCATGGCATTGGTTTATTCAGAATTCTGCCAGATACTTACAATTT
CAACACATTATATCCTTGACTCAATTCCTGATGTTTCTGTATGTCCTTCCTACTCTTAAGAGTTGAAACCTGTATGAAAT
CCGTATAGTGATAGCCTGATGGGGCAGACCGTCACTTGCCAGCAAGTTTCCACCGATCTCAAGACCACAGACATTGGACA
GAAACTTCCATGTGATTACAGTATTCTGATTGGTCACATCTCCTGTACCAACTATTCTGTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15671.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis