Browse Element(s) Details


OsAffx.32105.1.S1_at

Description tigr:9640.m03894
TID=OsAffx.32105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3987011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39830Os.51953.1.S1_at11/1112+24585973..24588513Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g39840Os.15671.1.A1_at11/1112+24594281..24597403expressed protein
LOC_Os12g39850OsAffx.32104.1.S1_at11/1112+24598941..24600230Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g39860Os.5685.1.S1_at9/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39860OsAffx.26820.1.S1_at1/1112+24603370..24606245Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os12g39870OsAffx.20039.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39870OsAffx.32105.1.S1_at11/1112+24608161..24611398expressed protein
LOC_Os12g39880Os.49916.1.S1_at11/1112+24612885..24615723expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.2.S1_x_at11/1112+24616310..24619047expressed protein
LOC_Os12g39890OsAffx.32106.1.S1_at9/1112+24616310..24619047expressed protein
LOC_Os12g39900OsAffx.1319.1.S1_at1/1112+24619342..24622359transposon protein, putative, Mariner sub-class
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32105.1.S1_at--699--4671Chr12:24608734..24608758 (25 bp)
GCGGACATCAGAAACTACGACGGTA
LOC_Os12g39870
OsAffx.32105.1.S1_at--21--8031Chr12:24608834..24608858 (25 bp)
GGAGGATCCAGCGTGTACCCAAGAT
LOC_Os12g39870
OsAffx.32105.1.S1_at--662--1631Chr12:24608843..24608867 (25 bp)
AGCGTGTACCCAAGATTGGCGACGA
LOC_Os12g39870
OsAffx.32105.1.S1_at--994--4071Chr12:24608868..24608892 (25 bp)
CGACGAGCTCCCCAAATGGGTGAAC
LOC_Os12g39870
OsAffx.32105.1.S1_at--265--9531Chr12:24608939..24608963 (25 bp)
TCTACAACGGCATACTGCTCATCGA
LOC_Os12g39870
OsAffx.32105.1.S1_at--440--5811Chr12:24608962..24608986 (25 bp)
GACGCCGATAACCTGCAGCAATTCA
LOC_Os12g39870
OsAffx.32105.1.S1_at--1096--7091Chr12:24609094..24609118 (25 bp)
GTCACGCTCGTCTGCGTAGACAAGA
LOC_Os12g39870
OsAffx.32105.1.S1_at--750--5611Chr12:24609112..24609136 (25 bp)
GACAAGATCGCCACACGCGGCAAGA
LOC_Os12g39870
OsAffx.32105.1.S1_at--676--5171Chr12:24609131..24609155 (25 bp)
GCAAGATCACGAGAGATTTCACCAT
LOC_Os12g39870
OsAffx.32105.1.S1_at--256--6051Chr12:24609143..24609167 (25 bp)
GAGATTTCACCATCAAATCATGGGT
LOC_Os12g39870
OsAffx.32105.1.S1_at--856--3071Chr12:24609158..24609182 (25 bp)
AATCATGGGTCCTGACCAACATCCA
LOC_Os12g39870
Target Sequence 
GCGGACATCAGAAACTACGACGGTAATTCCCTCGAGCTCTGCATCTTCAACCACCATGCCACCTTGCCGTCGCCGTCGCC
GGAGCAGTCGCCGGAGCAATGGAGGATCCAGCGTGTACCCAAGATTGGCGACGACGACGAGCTCCCCAAATGGGTGAACG
ACCTCGTCCTCCCCCTGCACGGCCACTACCTCTGCTGCGTCGACTTCTACAACGGCATACTGCTCATCGACGCCGATAAC
CTGCAGCAATTCAGCTACATCCCGCTGCCGGAGGAGGCCATGAATGGCAGCCGCCGCGTCGACGACGACGAGGACGACCC
CGACCCAGCTCGCCGCGTCTCCGTCACCGGCGCCGGCCTCGTCACGCTCGTCTGCGTAGACAAGATCGCCACACGCGGCA
AGATCACGAGAGATTTCACCATCAAATCATGGGTCCTGACCAACATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis