Browse Element(s) Details


Os.11758.1.S1_at

Description gb:AB114831.1
DB_XREF= gi:32879775
GEN=srp54-1
TID=Os.11758.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11758 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) srp54-1 mRNA for signal recognition particle 54kDa subunit, complete cds.
PROD=signal recognition particle 54kDa subunit
FL= gb:AK120871.1 gb:AB114831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5660011/11Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os12g399201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006617biological_processSRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0005737cellular_componentcytoplasm
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0005048molecular_functionsignal sequence binding
GO:0005525molecular_functionGTP binding
GO:0008312molecular_function7S RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11758.1.S1_at--1082--8451Chr01:32982866..32982890 (25 bp)
TGGCCGACCTGTCAGAGATGTTGTC
LOC_Os01g56600
Os.11758.1.S1_at--504--6291Chr01:32982882..32982906 (25 bp)
GATGTTGTCGACATGCTCGAAGAGT
LOC_Os01g56600
Os.11758.1.S1_at--322--8711Chr01:32982979..32983003 (25 bp)
TGTCCCGCAACATGAACGTTCAGCA
LOC_Os01g56600
Os.11758.1.S1_at--779--651Chr01:32983005..32983029 (25 bp)
ATGAGCAAAGTTCTCCCGCCGCAGA
LOC_Os01g56600
Os.11758.1.S1_at--636--2491Chr01:32983133..32983157 (25 bp)
AACAGATCCTGATTGCATTTGACAA
LOC_Os01g56600
Os.11758.1.S1_at--833--10011Chr01:32983177..32983201 (25 bp)
TAGACAGATTGTTCACCAGGGTGCT
LOC_Os01g56600
Os.11758.1.S1_at--99--5732Chr01:32983227..32983251 (25 bp)
GACTGCTGCAATTATGTTACCAGAT
LOC_Os01g56600
Os.11758.1.S1_at--70--6311Chr01:32983249..32983273 (25 bp)
GATGAGGATACACATGCACCCCGAT
LOC_Os01g56600
Os.11758.1.S1_at--1120--591Chr01:32983262..32983286 (25 bp)
ATGCACCCCGATGTAAAATTTGTTT
LOC_Os01g56600
Os.11758.1.S1_at--269--10091Chr01:32983291..32983315 (25 bp)
TAGGCAAATCGTAGCTCCCCAAAGT
LOC_Os01g56600
Os.11758.1.S1_at--949--4531Chr01:32983304..32983328 (25 bp)
GCTCCCCAAAGTTCTTACCGAGATT
LOC_Os01g56600
Target Sequence 
TGGCCGACCTGTCAGAGATGTTGTCGACATGCTCGAAGAGTACAAGCGGCTTGCTAAAATCTGGAGCNAAGATGAAAGGG
CTCNAAGATACCAAAGAAAGGAGAAATGAGTGCACTGTCCCGCAACATGAACGTTCAGCACATGAGCAAAGTTCTCCCGC
CGCAGATGCTGAAGCAGATAGGCGGCATGGGTGGCCTGCAATCTTTGATGAAACAAATGGGCTCAAAAGAAATGGGTGGC
ATGTTTGGAGGCATGGGTGGTGATAAGTAAACAGATCCTGATTGCATTTGACAAATCGTCAGAGATATGGCTGTAGACAG
ATTGTTCACCAGGGTGCTAAATGAGAGTTTTGAAGATGANACTGACTGCTGCAATTATGTTACCAGATGAGGATACACAT
GCACCCCGATGTAAAATTTGTTTATCNTAGGCAAATCGTAGCTCCCCAAAGTTCTTACCGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis