Browse Element(s) Details


OsAffx.21592.1.S1_x_at

Description gb:NM_191438.1
DB_XREF= gi:34909959
GEN=P0695H10.16
TID=OsAffx.21592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0695H10.16 (P0695H10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g566206/11tRNA pseudouridine synthase D family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21592.1.S1_x_at--503--9431Chr01:32988431..32988455 (25 bp)
TCGGGTGATCCAGCGACCTATTGAT
LOC_Os01g56620
OsAffx.21592.1.S1_x_at--450--5291Chr01:32988243..32988263 (21 bp)
GAATGGGATCTCATCACTTATACAG
LOC_Os01g56620
OsAffx.21592.1.S1_x_at--81--411Chr01:32988142..32988166 (25 bp)
ATCAGATGGGATTTCCAGCTGTACA
LOC_Os01g56620
OsAffx.21592.1.S1_x_at--28--9892Chr12:23848827..23848852 (25 bp)
TACATCACATGATTCTGGGCTGGAA
NONE
OsAffx.21592.1.S1_x_at--752--4711Chr01:32988103..32988127 (25 bp)
GCTGGAAGCTTCATTGGATGCCTCT
LOC_Os01g56620
OsAffx.21592.1.S1_x_at--436--2271Chr01:32988039..32988063 (25 bp)
AAATCTATTGGCAGCTCGGATATGT
LOC_Os01g56620
OsAffx.21592.1.S1_x_at--499--2751NONE
AAGACTTCAACTTCGCTATTACCTG
NONE
OsAffx.21592.1.S1_x_at--628--3691Chr01:32986188..32986212 (25 bp)
CTATTACCTGTTCCTTGCCTCAAAG
NONE
OsAffx.21592.1.S1_x_at--864--10631Chr01:32986174..32986198 (25 bp)
TTGCCTCAAAGCGATTCAACCCGGA
NONE
OsAffx.21592.1.S1_x_at--402--6091Chr01:32985536..32985560 (25 bp)
GAGTCTACTCCCGTTCAACTTCGAG
NONE
OsAffx.21592.1.S1_x_at--861--1491Chr01:32985513..32985537 (25 bp)
AGCACCTGACGCTACGGGCTACGGG
NONE
Target Sequence 
TCGGGTGATCCAGCGACCTATTGATTTTGAATGGGATCTCATCACTTATACAGATGAGAAAATACCTTTAGTAGAAACGG
ATTTAGATGTTTTGTCTAAAACGAAGCCATTAGAAGTAAATGAACTACTATCAGATGGGATTTCCAGCTGTACATCACAT
GATTCTGGGCTGGAAGCTTCATTGGATGCCTCTGAATCAATAAATGGAGCTAGCCTAGTAGTAGCAGAAGCCAAATCTAT
TGGCAGCTCGGATATGTTGGAGAAACTGGCCATAAAATTAGCATTTACTCTACCAGCATCATCTTATGCTACAATGGCTA
TTAGGGAGTTGATGAAGACTTCAACTTCGCTATTACCTGTTCCTTGCCTCAAAGCGATTCAACCCGGAGGGGGAAAAATG
GCCCCCGAGTCTACTCCCGTTCAACTTCGAGCACCTGACGCTACGGGCTACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21592.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis