Browse Element(s) Details


OsAffx.9407.1.S1_at

Description tigr:9629.m05545
TID=OsAffx.9407.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5665011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed
LOC_Os01g56680Os.5378.1.S1_at11/111+33034766..33036132Photosystem II reaction centre W protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9407.1.S1_at--697--5151Chr01:33009870..33009894 (25 bp)
GCAACTGTGCAAGCACACAGCTTTT
LOC_Os01g56650
OsAffx.9407.1.S1_at--135--7711Chr01:33009909..33009933 (25 bp)
GGGTCTCGACGAAAGCATACATGCG
LOC_Os01g56650
OsAffx.9407.1.S1_at--935--8251Chr01:33009963..33009987 (25 bp)
GGCAGCGCAGGAAAAGCTCGAGCAA
LOC_Os01g56650
OsAffx.9407.1.S1_at--174--4351Chr01:33009991..33010015 (25 bp)
CCAGCTGCCGAATGCCAATCAAATT
LOC_Os01g56650
OsAffx.9407.1.S1_at--1100--5231Chr01:33010016..33010040 (25 bp)
GAATCAGGCCAGTGTCAGGACAAGC
LOC_Os01g56650
OsAffx.9407.1.S1_at--427--5611Chr01:33010034..33010058 (25 bp)
GACAAGCATGCATATCGATCTACCA
LOC_Os01g56650
OsAffx.9407.1.S1_at--39--1311Chr01:33010065..33010089 (25 bp)
AGAGGCCAAGACACCAGGAAGGACA
LOC_Os01g56650
OsAffx.9407.1.S1_at--244--5311Chr01:33010082..33010106 (25 bp)
GAAGGACACAAGGTCCACACTGCAC
LOC_Os01g56650
OsAffx.9407.1.S1_at--719--2611Chr01:33010117..33010141 (25 bp)
AACCCGGCAATGATGCACGACGCGA
LOC_Os01g56650
OsAffx.9407.1.S1_at--819--651Chr01:33010129..33010153 (25 bp)
ATGCACGACGCGACGAGAGGCTCCG
LOC_Os01g56650
OsAffx.9407.1.S1_at--414--1311Chr01:33010144..33010168 (25 bp)
AGAGGCTCCGCACTGCACGCGACGA
LOC_Os01g56650
Target Sequence 
GCAACTGTGCAAGCACACAGCTTTTCTGAGAGAAAAAAGGGGTCTCGACGAAAGCATACATGCGCGGCGGCGCGCGTGCC
GTACGTTTTCAGCGGCAGCGCAGGAAAAGCTCGAGCAAAAGCCAGCTGCCGAATGCCAATCAAATTGAATCAGGCCAGTG
TCAGGACAAGCATGCATATCGATCTACCAGCCCCAAGAGGCCAAGACACCAGGAAGGACACAAGGTCCACACTGCACGCC
TTCGACCAACCCGGCAATGATGCACGACGCGACGAGAGGCTCCGCACTGCACGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis