Browse Element(s) Details


Os.5378.1.S1_at

Description gb:AK119225.1
DB_XREF= gi:37988848
TID=Os.5378.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.5378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.11 (P0490D09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H08, full insert sequence.
FL= gb:AK119161.1 gb:AK119225.1 gb:AK060476.1 gb:AK060438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5668011/11Photosystem II reaction centre W protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed
LOC_Os01g56680Os.5378.1.S1_at11/111+33034766..33036132Photosystem II reaction centre W protein containing protein, expressed
LOC_Os01g56690NANA1+33041627..33043265Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g56700OsAffx.11626.1.S1_at5/111+33048293..33048628hypothetical protein
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5378.1.S1_at--922--6031Chr01:33036059..33036083 (25 bp)
GAGATCGAGGCAAGGCAACCGCCAT
LOC_Os01g56680
Os.5378.1.S1_at--1113--8871Chr01:33035824..33035848 (25 bp)
TGAGGTGCAACTACTCCAAGGAGGC
LOC_Os01g56680
Os.5378.1.S1_at--265--9431Chr01:33035677..33035701 (25 bp)
TCGGGCTGAGCAACAACCTGCTGGG
LOC_Os01g56680
Os.5378.1.S1_at--531--8351Chr01:33035570..33035594 (25 bp)
GGCGGCCTCTCGCTCTAGAGAGCCT
LOC_Os01g56680
Os.5378.1.S1_at--19--3691Chr01:33035556..33035580 (25 bp)
CTAGAGAGCCTCTATACATGTAAAC
LOC_Os01g56680
Os.5378.1.S1_at--575--2491Chr01:33035534..33035558 (25 bp)
AACATGGTGGTTGTGAACGGTGTAA
LOC_Os01g56680
Os.5378.1.S1_at--340--10751Chr01:33035508..33035532 (25 bp)
TTGAGGAGAACGTACATGGCTGTGT
LOC_Os01g56680
Os.5378.1.S1_at--685--8331Chr01:33035491..33035515 (25 bp)
GGCTGTGTTGTATCTAAACTGTTCC
LOC_Os01g56680
Os.5378.1.S1_at--238--2391Chr01:33035476..33035500 (25 bp)
AAACTGTTCCTATTCTGAGAGATGT
LOC_Os01g56680
Os.5378.1.S1_at--636--9631Chr01:33035444..33035468 (25 bp)
TCAGATAAAGTACTTTCTCCATGGG
LOC_Os01g56680
Os.5378.1.S1_at--1115--6591Chr01:33035418..33035442 (25 bp)
GATTGTGCACGCATCTGGCAACTTA
LOC_Os01g56680
Target Sequence 
GAGATCGAGGCAAGGCAACCGCCATGGCCACCGTCAGCGCCGCCGCGGCGACCTCCGTCGTTGCCCGCGCCGTCCTCGCC
GGGCCACTTGGGCTGCCGCAGATGAGGGCGAGGAGGAGCGAGAGGGTGAGGTGCAACTACTCCAAGGAGGCGGCGACACC
GGCGGCGGCCGTCAAGGGAGCCGGCGCGTCGCTACTGGCGATGGCGGCGACGGCGGCGCCCGCGATGGCGCTCGTCGACG
AGAGGATGTCGACGGAGGGCACCGGGCTCAGCCTCGGGCTGAGCAACAACCTGCTGGGGTGGATCCTGCTCGGGGTGTTC
GGCCTCATCTGGTCGCTCTACACCATCTACACCTCCGACCTCGAGGAGGACGAGGAGTCCGGCGGCCTCTCGCTCTAGAG
AGCCTCTATACATGTAAACATGGTGGTTGTGAACGGTGTAATTTGAGGAGAACGTACATGGCTGTGTTGTATCTAAACTG
TTCCTATTCTGAGAGATGTTTTAGCATCAGATAAAGTACTTTCTCCATGGGGGATTGTGCACGCATCTGGCAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis