Browse Element(s) Details


Os.47942.1.A1_at

Description gb:AK070712.1
DB_XREF= gi:32980736
TID=Os.47942.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060M04, full insert sequence.
FL= gb:AK070712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6167011/11Calreticulin precursor, putative, expressed
LOC_Os01g567109/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47942.1.A1_at--5--6351Chr03:34891928..34891949 (22 bp)
GATGCTGAGAAAGCCGCCTTTGATG
LOC_Os03g61670
Os.47942.1.A1_at--575--5171Chr03:34891496..34891520 (25 bp)
GCAAGGATGATTCTTCCGCTGCGAA
LOC_Os03g61670
Os.47942.1.A1_at--1143--7734Chr01:33049946..33049969 (24 bp)
GGTGTTGGTGCTAAATATTTCCTAA
LOC_Os01g56710
Os.47942.1.A1_at--977--5396Chr01:33049996..33050020 (25 bp)
GAAGCTTGTGCTAGTTTTAACTGGT
LOC_Os01g56710
Os.47942.1.A1_at--708--9816Chr01:33050013..33050037 (25 bp)
TAACTGGTTTCTTTACTTGCTTGCT
LOC_Os01g56710
Os.47942.1.A1_at--499--9896Chr01:33050026..33050050 (25 bp)
TACTTGCTTGCTTGAGGGCTGAACA
LOC_Os01g56710
Os.47942.1.A1_at--5--1095Chr01:33050040..33050064 (25 bp)
AGGGCTGAACAGTACACTTGCTTGT
LOC_Os01g56710
Os.47942.1.A1_at--310--2077Chr01:33050055..33050079 (25 bp)
ACTTGCTTGTACGTTGGGCAGCACA
LOC_Os01g56710
Os.47942.1.A1_at--917--3296Chr01:33050076..33050100 (25 bp)
CACACCATCATCAGTCTATACACAT
LOC_Os01g56710
Os.47942.1.A1_at--398--3696Chr01:33050091..33050115 (25 bp)
CTATACACATGCACTGGCTTTCTAT
LOC_Os01g56710
Os.47942.1.A1_at--175--4916Chr01:33050146..33050170 (25 bp)
GCTTCAGGACCTAGCTAGAGACTTG
LOC_Os01g56710
Target Sequence 
GATGCTGAGAAAGCCGCCTTTGATGAAGCTGAGNAGAAGAGGCTTGAGGAGGAATCTGCANACTCTAAAATCGACGACAG
CGACGACGACGCTAGTGATGATGAGGATGAGGCGGACGATGACAAGGCTGATGTCGTTGCTGAGCAGACCAAGGACAAGG
GTGATGAGAAACCGCAGGNCATCAAGGTCTCTGCTGATGAGAAGCCAAAGAGCAGCAAGGATGATTCTTCCGCTGCGAAG
AAGGACGAGCTTTAGATATTTTATTATTATTAGATGATAATATGTCATGACGAAGAGGCAACTGAATCAGGTGTTGGTGC
TAAATATTTCCTAAGCAGGGGATCAGAGAAGAGGAGCAGAGAAGCTTGTGCTAGTTTTAACTGGTTTCTTTACTTGCTTG
CTTGAGGGCTGAACAGTACACTTGCTTGTACGTTGGGCAGCACACCATCATCAGTCTATACACATGCACTGGCTTTCTAT
TTATAGGCTTGATAAACCGATATGTAAGAAGCTTCAGGACCTAGCTAGAGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47942.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis