Browse Element(s) Details


Os.6881.1.S1_at

Description gb:AK106890.1
DB_XREF= gi:32992099
TID=Os.6881.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G05, full insert sequence.
FL= gb:AK106890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6170011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6881.1.S1_at--742--7991Chr03:34910724..34910748 (25 bp)
GGATGTACACATGGCTTTCAGCTTC
LOC_Os03g61700
Os.6881.1.S1_at--692--7331Chr03:34910770..34910794 (25 bp)
GTGAAAAGGTTTTTGCCTGGTGCAT
LOC_Os03g61700
Os.6881.1.S1_at--934--5951Chr03:34911251..34911275 (25 bp)
GAGAATTTTACGGTCGCTATTGCAA
LOC_Os03g61700
Os.6881.1.S1_at--465--10231Chr03:34911268..34911292 (25 bp)
TATTGCAAATACCAGCCAGCGGATT
LOC_Os03g61700
Os.6881.1.S1_at--359--3031Chr03:34911351..34911375 (25 bp)
AATGCGAGTGAGATCCTTGAGCTGG
LOC_Os03g61700
Os.6881.1.S1_at--662--8071Chr03:34911467..34911491 (25 bp)
GGAGCATCTTTGTATCTGACTCGAT
LOC_Os03g61700
Os.6881.1.S1_at--1160--6271Chr03:34911489..34911513 (25 bp)
GATGATCTTGTAGTGTTTCTCGCTG
LOC_Os03g61700
Os.6881.1.S1_at--984--10311Chr03:34911504..34911528 (25 bp)
TTTCTCGCTGATGTGTTTTCTGTTC
LOC_Os03g61700
Os.6881.1.S1_at--414--10611Chr03:34911521..34911545 (25 bp)
TTCTGTTCATATGATGCACGCCTGC
LOC_Os03g61700
Os.6881.1.S1_at--793--4971Chr03:34911544..34911568 (25 bp)
GCATCTCTGTCCTGTAATGTGGTTC
LOC_Os03g61700
Os.6881.1.S1_at--858--791Chr03:34911560..34911584 (25 bp)
ATGTGGTTCGCGGTTGTCAATTGTG
LOC_Os03g61700
Target Sequence 
GGATGTACACATGGCTTTCAGCTTCACTTGNCCATTGCAGATGACAGTGAAAAGGTTTTTGCCTGGTGCATTGGGCAAAC
ANCCGTAGAGTTCCTTCAAATATCTCCTGATGAATATATGGAACTCCCTGAGGATGAACGAGCAATGTATCTCTATACTC
TTCAGAATGAGAATTTTACGGTCGCTATTGCAAATACCAGCCAGCGGATTGAAGCGTATATTGAAGGCGAGAAATTTCTT
CCAGTATGGGAGATCACAAGAGCCCAAAAATGCGAGTGAGATCCTTGAGCTGGATTTGGTAGCTATTGCAGAAGAAGAAA
GGCGGCAATATTAATAAGTTTATGGTATATCAATCGTAAAACTATTCAGGATTAGCAATGGAATGGAGCATCTTTGTATC
TGACTCGATGATCTTGTAGTGTTTCTCGCTGATGTGTTTTCTGTTCATATGATGCACGCCTGCATCTCTGTCCTGTAATG
TGGTTCGCGGTTGTCAATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis