Browse Element(s) Details


Os.6667.1.S1_at

Description gb:AK120137.1
DB_XREF= gi:37989760
TID=Os.6667.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027K24, full insert sequence.
FL= gb:AK120137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6171011/11Galactokinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6667.1.S1_at--669--9431Chr03:34918424..34918448 (25 bp)
TCGGAGCACGTCTTACTGGAGCAGG
LOC_Os03g61710
Os.6667.1.S1_at--104--7551Chr03:34918454..34918478 (25 bp)
GTGGCTGTGCAGTCGCTTTGGTTAA
LOC_Os03g61710
Os.6667.1.S1_at--699--2931Chr03:34918477..34918501 (25 bp)
AAGGAAGGCATTGTCCCGCAGTTTA
LOC_Os03g61710
Os.6667.1.S1_at--627--831Chr03:34918734..34918758 (25 bp)
AGGATCTTGGGTTGTACGTGTTCGC
LOC_Os03g61710
Os.6667.1.S1_at--122--1671Chr03:34918764..34918788 (25 bp)
AGCCGTCGAGTGGAGCAGCCATATT
LOC_Os03g61710
Os.6667.1.S1_at--153--231Chr03:34918784..34918808 (25 bp)
ATATTCAAGCTGTAGGCCACCAATC
LOC_Os03g61710
Os.6667.1.S1_at--936--511Chr03:34918832..34918856 (25 bp)
ATCGATTCAGACCAGAAGCGCCACG
LOC_Os03g61710
Os.6667.1.S1_at--739--991Chr03:34918869..34918893 (25 bp)
AGGTTCCTACATGACCTAAGTCCAC
LOC_Os03g61710
Os.6667.1.S1_at--844--3051Chr03:34918952..34918976 (25 bp)
AATCTATTACTATGCCGGGACACAA
LOC_Os03g61710
Os.6667.1.S1_at--830--6991Chr03:34919079..34919103 (25 bp)
GTACTTGCAGTGGACCTTTGGACTT
LOC_Os03g61710
Os.6667.1.S1_at--304--131Chr03:34919114..34919138 (25 bp)
ATTCAGGTGTCATCTTCGTGTGTAC
LOC_Os03g61710
Target Sequence 
TCGGAGCACGTCTTACTGGAGCAGGGTGGGGTGGCTGTGCAGTCGCTTTGGTTAAGGAAGGCATTGTCCCGCAGTTTATT
CTCAATTTAAAGGAAACGTACTATAAATCAAGGATCGACCGGGGAGTGATCAACCAGAAGGATCTTGGGTTGTACGTGTT
CGCGTCCAAGCCGTCGAGTGGAGCAGCCATATTCAAGCTGTAGGCCACCAATCCACCATTCTTTCGCCACCTGTAAATCG
ATTCAGACCAGAAGCGCCACGACGCAAGCACGCAGGTTCCTACATGACCTAAGTCCACCCACACGTCAATGTATCTTTAT
ACAAGTACTTATTAGAAACAATAAATCATGTCTATTAATCTATTACTATGCCGGGACACAACCAATAGAGACTTCAAAAC
AATGATGCATCAGTGGTTAGTAGGGTGTCGATGGAGGTTGCTTTTTTTTTTTTNNCTTATACAGTGATACGATGATACTT
CTAGTACTTGCAGTGGACCTTTGGACTTTGGTCAAGTTATTCAGGTGTCATCTTCGTGTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis