Browse Element(s) Details


Os.47353.1.A1_at

Description gb:AK065345.1
DB_XREF= gi:32975363
TID=Os.47353.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013008D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013008D19, full insert sequence.
FL= gb:AK065345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g616703/11Calreticulin precursor, putative, expressed
LOC_Os09g042101/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g592641/11Calreticulin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47353.1.A1_at--715--7751Chr03:33683537..33683561 (25 bp)
GGTGATTGTGATAATCTTCCTCCAA
LOC_Os03g59264
Os.47353.1.A1_at--204--2471Chr03:33683241..33683265 (25 bp)
AACACAGCCTGGGACGACAAGGAAT
NONE
Os.47353.1.A1_at--579--5972Chr03:33683197..33683221 (25 bp)
GAGAAGCCTGAGGTTGCTTTCCTTT
NONE
Os.47353.1.A1_at--327--4891Chr03:33683182..33683206 (25 bp)
GCTTTCCTTTGTTTGCGCAACTTTA
NONE
Os.47353.1.A1_at--402--6812Chr03:34893026..34893050 (25 bp)
GTTTTTACTAATACCACTCTACTGA
LOC_Os03g61670
Os.47353.1.A1_at--1085--9912Chr03:33683073..33683097 (25 bp)
TACTGTATGTTGTGAGCTTGCTGCT
NONE
Os.47353.1.A1_at--12--4931Chr03:33683058..33683082 (25 bp)
GCTTGCTGCTCCTCAGATAGCAATA
NONE
Os.47353.1.A1_at--487--4971Chr03:33683013..33683037 (25 bp)
GCATCATGAGGCCATATTTGATCTC
NONE
Os.47353.1.A1_at--802--6417Chr12:3121532..3121556 (25 bp)
GATCTCATCAAAGGCTCATCAAAGA
NONE
Os.47353.1.A1_at--239--9717Chr12:3121573..3121597 (25 bp)
TCAAGTGACTTGTAACAGCCATATT
NONE
Os.47353.1.A1_at--351--9012Chr09:13251638..13251661 (24 bp)
TGAATCCTAGGCTTGTACACATACA
NONE
Target Sequence 
GGTGATTGTGATAATCTTCCTCCAAAGAAGAAGAAGGATCCTGAAGCCAAGAAGGTTGATGTGATGGGAAAGGACTGAAG
TTTAGATCCAAACTTTGGATCTAAACACAGCCTGGGACGACAAGGAATCATTCCTGATCCTGAGTACGAGAAGCCTGAGG
TTGCTTTCCTTTGTTTGCGCAACTTTAGATGATATTTCTGTCTGAAGATTAATTGAGTTTTTACTAATACCACTCTACTG
AGTTTCTAAATGAAAATGGGTGGCAGTTTTGTACTGTATGTTGTGAGCTTGCTGCTCCTCAGATAGCAATAGAGTACATT
GTGTTACAAAAGCATCATGAGGCCATATTTGATCTCATCAAAGGCTCATCAAAGAGCAACAATGGCANCAATCAAGTGAC
TTGTAACAGCCATATTATGGAGTATTTGTATCACAATAACAGTGAATCCTAGGCTTGTACACATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47353.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis