Browse Element(s) Details


Os.23649.1.S1_a_at

Description gb:AK066131.1
DB_XREF= gi:32976149
TID=Os.23649.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0027B08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052G24, full insert sequence.
FL= gb:AK066131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23649.1.S1_a_at--425--8011Chr03:34875747..34875771 (25 bp)
GGAGGCTGCTCTTCGAATGTGTAAA
LOC_Os03g61620
Os.23649.1.S1_a_at--950--6251Chr03:34875910..34875934 (25 bp)
GATGGTGGATGAACTCGTGTACAAA
LOC_Os03g61620
Os.23649.1.S1_a_at--17--6631Chr03:34875973..34875997 (25 bp)
GTTGGAGTCATACGAATCTGGCATT
LOC_Os03g61620
Os.23649.1.S1_a_at--387--6671Chr03:34876012..34876036 (25 bp)
GTTGCTTGGTTCCTTGATCGATGAA
LOC_Os03g61620
Os.23649.1.S1_a_at--641--2971Chr03:34876036..34876060 (25 bp)
AATGGTTGCTGATCTACTTCTAGTG
LOC_Os03g61620
Os.23649.1.S1_a_at--288--1111Chr03:34876057..34876081 (25 bp)
AGTGTCTGACACTTCTTTGTAGCAG
LOC_Os03g61620
Os.23649.1.S1_a_at--130--6951Chr03:34876075..34876099 (25 bp)
GTAGCAGGTGTTCTTTTCCCACTAA
LOC_Os03g61620
Os.23649.1.S1_a_at--29--9771Chr03:34876097..34876121 (25 bp)
TAATGATACCAGTTTGACAGCCACA
LOC_Os03g61620
Os.23649.1.S1_a_at--868--6691Chr03:34876134..34876158 (25 bp)
GTTCCATATGTTGGTCTCACAAATT
LOC_Os03g61620
Os.23649.1.S1_a_at--300--1191Chr03:34876169..34876193 (25 bp)
AGTAGTTCGGTCATGCAACTGTGCA
LOC_Os03g61620
Os.23649.1.S1_a_at--739--5151Chr03:34876183..34876207 (25 bp)
GCAACTGTGCATGTTTTGTCACGAA
LOC_Os03g61620
Target Sequence 
GGAGGCTGCTCTTCGAATGTGTAAACGAGATACTGAGTGTGAGATGTGCATACTATTTCAATGCCGGNTACGGCTCATGG
TTCTTGGGGATGGCAATTNTGAAGAAGCTCACAGCTGAAGAAATCTATGCGGAGATGACTGATCTGAAGGTTGCTGAGGA
GTGGATGGTGGATGAACTCGTGTACAAAGAAATGAGTAGTCCTCTGGGGAGCTGGGTAGATTTCAAGTTGGAGTCATACG
AATCTGGCATTGACATTACAACAGAGTTGCTTGGTTCCTTGATCGATGAAATGGTTGCTGATCTACTTCTAGTGTCTGAC
ACTTCTTTGTAGCAGGTGTTCTTTTCCCACTAATGATACCAGTTTGACAGCCACAAACAAGGTTTTTGTTCCATATGTTG
GTCTCACAAATTGTAAATTGGTAGTAGTTCGGTCATGCAACTGTGCATGTTTTGTCACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23649.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis