Browse Element(s) Details


Os.7256.1.S1_at

Description gb:AK103115.1
DB_XREF= gi:32988324
TID=Os.7256.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0027B08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119F15, full insert sequence.
FL= gb:AK103115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6156011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7256.1.S1_at--533--8951Chr03:34846371..34846395 (25 bp)
TGACAGGATCCACAGCTTGCACAAT
LOC_Os03g61560
Os.7256.1.S1_at--1052--8831Chr03:34846293..34846317 (25 bp)
TGATAACTATCATTCCAGCCGTCTA
LOC_Os03g61560
Os.7256.1.S1_at--555--331Chr03:34846256..34846280 (25 bp)
ATACTTGAATCTCCAGCATTTGCTG
LOC_Os03g61560
Os.7256.1.S1_at--274--1551Chr03:34846242..34846266 (25 bp)
AGCATTTGCTGCCATCCTATGGAAA
LOC_Os03g61560
Os.7256.1.S1_at--963--2871Chr03:34845916..34845940 (25 bp)
AAGGTGGTCGCAGCATTCCTTGAAT
LOC_Os03g61560
Os.7256.1.S1_at--136--5231Chr03:34845895..34845919 (25 bp)
GAATCGCCCGATTCCAAGGTAAGGG
LOC_Os03g61560
Os.7256.1.S1_at--535--1211Chr03:34845791..34845815 (25 bp)
AGTTTTGCACCTGACTTCCAAGCAT
LOC_Os03g61560
Os.7256.1.S1_at--477--4111Chr03:34845740..34845764 (25 bp)
CGAACATCCGTGCTTCTGTGTTGGA
LOC_Os03g61560
Os.7256.1.S1_at--396--2111Chr03:34845702..34845726 (25 bp)
ACATGAGTATGTTCTGCGGAGCAAT
LOC_Os03g61560
Os.7256.1.S1_at--190--4691Chr03:34845687..34845711 (25 bp)
GCGGAGCAATTTTGTCACCTGTTAA
LOC_Os03g61560
Os.7256.1.S1_at--1108--1331Chr03:34845661..34845685 (25 bp)
AGAGTGTAGCTACTGCTGTCACCAG
LOC_Os03g61560
Target Sequence 
TGACAGGATCCACAGCTTGCACAATGCAATAGCNTTCTGATGCAGCACGTCCAAAGGCAGAAGATACTGAACATGCCTTT
GATAACTATCATTCCAGCCGTCTAATCAGAAGACTTATACTTGAATCTCCAGCATTTGCTGCCATCCTATGGAAAAAAGC
TCTTGAAGGCAAATGCAAGACATGGGCTGATGGGCACAGTTCCAAGGTGGTCGCAGCATTCCTTGAATCGCCCGATTCCA
AGGTAAGGGATCTTGCAAAANGCTGAGCTGCAGCCNCTGGTTGATCGTGGCATTCTGAAAATCTCAGACCATAAAGCAGT
CGAAAAATGAGTTTTGCACCTGACTTCCAAGCATCTACAGCAATACGAGAAATCGACAGACGAACATCCGTGCTTCTGTG
TTGGATGTTTTTTTTGTAACATGAGTATGTTCTGCGGAGCAATTTTGTCACCTGTTAAAAGAGTGTAGCTACTGCTGTCA
CCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis