Browse Element(s) Details


Os.54537.1.S1_at

Description gb:AK105553.1
DB_XREF= gi:32990762
TID=Os.54537.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B01, full insert sequence.
FL= gb:AK105553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3171011/11expressed protein
LOC_Os03g615501/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein
LOC_Os05g31700NANA5+18375781..18375993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g31710Os.54537.1.S1_at11/115+18382240..18383634expressed protein
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54537.1.S1_at--943--5312Chr05:18383040..18383064 (25 bp)
GAAGGGTTTGCATGCAGCGCTGCAA
LOC_Os05g31710
Os.54537.1.S1_at--284--4131Chr05:18383177..18383201 (25 bp)
CGCATCGGGAGCTTGGAGACATCTA
LOC_Os05g31710
Os.54537.1.S1_at--819--3691Chr05:18383199..18383223 (25 bp)
CTATAATATCCAGTTCCAGCTTGTG
LOC_Os05g31710
Os.54537.1.S1_at--358--9511Chr05:18383242..18383266 (25 bp)
TCAGTCCGTACTGGTCCTAATTCAA
LOC_Os05g31710
Os.54537.1.S1_at--700--1691Chr05:18383272..18383296 (25 bp)
ACCACCGACATATATACTCTTTTCC
LOC_Os05g31710
Os.54537.1.S1_at--464--10391Chr05:18383291..18383315 (25 bp)
TTTTCCGTTTAGGTCATCCGATCGA
LOC_Os05g31710
Os.54537.1.S1_at--317--3111Chr05:18383324..18383348 (25 bp)
AATAGTACTGGTGGCCGGTGATCGA
LOC_Os05g31710
Os.54537.1.S1_at--691--6391Chr05:18383343..18383367 (25 bp)
GATCGATGGTCTCTTTGGACTCTGA
LOC_Os05g31710
Os.54537.1.S1_at--195--471Chr05:18383404..18383428 (25 bp)
ATCTCGATCGTTTCCTTCATGTGGA
LOC_Os05g31710
Os.54537.1.S1_at--280--10171Chr05:18383435..18383459 (25 bp)
TATAATCGATCACCCTCGGTTATTT
LOC_Os05g31710
Os.54537.1.S1_at--1030--7911Chr05:18383480..18383504 (25 bp)
GGTTGTGTGCTATCTGCTATTATCT
LOC_Os05g31710
Target Sequence 
GAAGGGTTTGCATGCAGCGCTGCAAGTAATGTTGCAGATCTGGGTGCGGCTGCTGATCTACGCGGCGGGCAAGTCCCAGC
ACGCACGGCGGCTGAGCATGGGAGGGGAGCTGCTCACCTTCGTTTGGCTCCTCATGGCGCATCGGGAGCTTGGAGACATC
TATAATATCCAGTTCCAGCTTGTGGAAAAAGAGAAAGACGGGTCAGTCCGTACTGGTCCTAATTCAACAATAACCACCGA
CATATATACTCTTTTCCGTTTAGGTCATCCGATCGACATGATCAAATAGTACTGGTGGCCGGTGATCGATGGTCTCTTTG
GACTCTGATTATCTTAAGCCATCAAGGGCATGTATGCCCGCACCATCTCGATCGTTTCCTTCATGTGGATCATAATATAA
TCGATCACCCTCGGTTATTTTTTTTCTTTCTTTTCTTTTTGGTTGTGTGCTATCTGCTATTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis