Browse Element(s) Details


Os.55351.1.S1_x_at

Description gb:AK107921.1
DB_XREF= gi:32993130
TID=Os.55351.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H04, full insert sequence.
FL= gb:AK107921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g316908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein
LOC_Os05g31660OsAffx.27109.1.S1_at10/115+18346870..18347692expressed protein
LOC_Os05g31670Os.11260.1.S1_at11/115+18348218..18349149plasma membrane associated protein, putative, expressed
LOC_Os05g31680Os.27416.1.S1_at6/115+18352170..18356265expressed protein
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein
LOC_Os05g31700NANA5+18375781..18375993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g31710Os.54537.1.S1_at11/115+18382240..18383634expressed protein
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55351.1.S1_x_at--71--4091Chr05:18367705..18367729 (25 bp)
CGACTTCTTCGTGGAGGTGTACGCC
LOC_Os05g31690
Os.55351.1.S1_x_at--875--3991Chr05:18367736..18367760 (25 bp)
CGTGTGAGCACGGACATGAGCTGCA
LOC_Os05g31690
Os.55351.1.S1_x_at--911--8911Chr05:18367752..18367776 (25 bp)
TGAGCTGCAGCGACATGTCCCTGGA
LOC_Os05g31690
Os.55351.1.S1_x_at--407--5371Chr05:18367855..18367879 (25 bp)
GAAGAACGACCTCGATGTCTGCGGC
LOC_Os05g31690
Os.55351.1.S1_x_at--897--1011Chr05:18367919..18367943 (25 bp)
AGGTTTGGTGCCTTCAGAGACAGCA
LOC_Os05g31690
Os.55351.1.S1_x_at--532--5831Chr05:18367966..18367990 (25 bp)
GACCTCCGGCGAATTCGTCGAGGAG
LOC_Os05g31690
Os.55351.1.S1_x_at--88--6071NONE
GAGTTGCCGTGGATCACGTACCAGG
NONE
Os.55351.1.S1_x_at--529--171Chr05:18368041..18368065 (25 bp)
ATTTTCAGACGAACACGGGATCAGA
LOC_Os05g31690
Os.55351.1.S1_x_at--1067--8031NONE
GGAGATCACTACAGCAGTTGTTTCT
NONE
Os.55351.1.S1_x_at--332--2071NONE
ACATTTTGCCTGTGAATCGGAGATC
NONE
Os.55351.1.S1_x_at--1011--491Chr05:18368218..18368242 (25 bp)
ATCGGAGATCGCGTCGGAGCATGAA
LOC_Os05g31690
Target Sequence 
CGACTTCTTCGTGGAGGTGTACGCCGGCCCGCGTGTGAGCACGGACATGAGCTGCAGCGACATGTCCCTGGACGAGATGG
ACGCCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCGGCGCCGACGAGTCCGACGAGAAGGGGAAGAACGAC
CTCGATGTCTGCGGCGACGGCGGCGACGATGACGGCGAGGCGAGGCCGGAGGAGAGGTTTGGTGCCTTCAGAGACAGCAC
GTCGGAGTGCAGCGACGCGTCGACCTCCGGCGAATTCGTCGAGGAGTTGCCGTGGATCACGTACCAGGGGTATGAGGATG
ATAGCTTGGATGGTGAATTTTCAGACGAACACGGGATCAGAGACGAGGAGATCACTACAGCAGTTGTTTCTGAATTTCAA
GAAGATCTAGAAGAAGAGGGCACATCAGGTAGATTGGGAGATGGGTGCGAAGATGAGGCTGCTCAACAACAGGAAGACAA
TGATGAGCAAAACATCTCACATTTTGCCTGTGAATCGGAGATCGCGTCGGAGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55351.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis