Browse Element(s) Details


OsAffx.26950.1.S1_at

Description tigr:9633.m01711
TID=OsAffx.26950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1897011/11hypothetical protein
LOC_Os12g084906/11hypothetical protein
LOC_Os05g316306/11transposon protein, putative, Mutator sub-class
LOC_Os12g079101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18910Os.46995.1.S1_x_at1/115+10957906..10960833retrotransposon protein, putative, unclassified
LOC_Os05g18920NANA5+10961163..10965386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18930NANA5+10965946..10968207retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18940OsAffx.26949.1.S1_at11/115+10970220..10970627Stigma-specific protein, Stig1 containing protein
LOC_Os05g18950Os.23548.1.S1_at11/115+10979730..10981461pentatricopeptide, putative, expressed
LOC_Os05g18960OsAffx.27108.2.S1_s_at11/115+10982042..10982641GRF zinc finger family protein
LOC_Os05g18970OsAffx.26950.1.S1_at11/115+10982991..10985566hypothetical protein
LOC_Os05g18980OsAffx.8589.1.S1_at1/115+10993853..10997167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990Os.39476.1.S1_at4/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990OsAffx.8455.1.S1_at1/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19000Os.5881.1.S1_at2/115+11004994..11007169expressed protein
LOC_Os05g19010Os.56962.1.S1_at11/115+11008445..11009200expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26950.1.S1_at--796--4533Chr12:4306129..4306153 (25 bp)
GCCCGAGCTATTTGGACACCTAAAG
LOC_Os12g08490
OsAffx.26950.1.S1_at--79--8693Chr12:4306165..4306189 (25 bp)
TGTGATGTCTGGGACTTTGCTCCAC
LOC_Os12g08490
OsAffx.26950.1.S1_at--850--10733Chr12:4306211..4306235 (25 bp)
TTGCAAACAGGTCTTCGTGCTCTTT
LOC_Os12g08490
OsAffx.26950.1.S1_at--93--7153Chr12:4306221..4306245 (25 bp)
GTCTTCGTGCTCTTTCTAATGATAA
LOC_Os12g08490
OsAffx.26950.1.S1_at--1156--171Chr05:10983260..10983284 (25 bp)
ATTTACCACTCTGATTCAACACCTA
LOC_Os05g18970
OsAffx.26950.1.S1_at--901--10511Chr05:10983246..10983270 (25 bp)
TTCAACACCTATTGCTAGCCATCAA
LOC_Os05g18970
OsAffx.26950.1.S1_at--756--372Chr05:18339523..18339547 (25 bp)
ATCAACCTTGTCAAAGTGCACCCTG
LOC_Os05g31630
OsAffx.26950.1.S1_at--502--2853Chr12:4306561..4306585 (25 bp)
AAGTGCACCCTGTGGTAGCCATCAA
LOC_Os12g08490
OsAffx.26950.1.S1_at--420--9991Chr05:10983198..10983222 (25 bp)
TAGCCATCAACCTTCTACCAATGCA
LOC_Os05g18970
OsAffx.26950.1.S1_at--35--3591Chr05:10983171..10983195 (25 bp)
CATTCCTGACCATCCAACATATGAC
LOC_Os05g18970
OsAffx.26950.1.S1_at--684--8953Chr12:4306624..4306648 (25 bp)
TGACAGTACACCCATAGCTAGCCAC
LOC_Os12g08490
Target Sequence 
GCCCGAGCTATTTGGACACCTAAAGGACCATTGCAATGTGATGTCTGGGACTTTGCTCCACTGGTTGTTTCCTGGTAAAG
ATTTGCAAACAGGTCTTCGTGCTCTTTCTAATGATAAGGCTTGCAAACTGATGTGTGAATGTACTGGAGAATTGGATGTA
GCAGATTTAGAAGTTGAAAGTGAAGAGGAGGGTGGGAAAATAGAGGTTGATATAGATGTATCCAAAGGGAAAGGGGTTGA
TGAGGTTGGTGGTAGTGGATGTAAGGGTAAAGAACTGGCAGAGGAAGAAACTGATAGGAGGATAGTTATTTACCACTCTG
ATTCAACACCTATTGCTAGCCATCAACCTTGTCAAAGTGCACCCTGTGGTAGCCATCAACCTTCTACCAATGCACCCATT
CCTGACCATCCAACATATGACAGTACACCCATAGCTAGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis