Browse Element(s) Details


Os.5881.1.S1_at

Description gb:AK068945.1
DB_XREF= gi:32978969
TID=Os.5881.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170M23, full insert sequence.
FL= gb:AK068945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1903011/11expressed protein
LOC_Os05g190002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18980OsAffx.8589.1.S1_at1/115+10993853..10997167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990Os.39476.1.S1_at4/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990OsAffx.8455.1.S1_at1/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19000Os.5881.1.S1_at2/115+11004994..11007169expressed protein
LOC_Os05g19010Os.56962.1.S1_at11/115+11008445..11009200expressed protein
LOC_Os05g19020NANA5+11012876..11014091retrotransposon protein, putative, unclassified
LOC_Os05g19030Os.5881.1.S1_at11/115+11021940..11024991expressed protein
LOC_Os05g19040Os.54915.1.S1_at9/115+11028518..11031728B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os05g19050OsAffx.14758.1.S1_at10/115+11034946..11040871hypothetical protein
LOC_Os05g19060OsAffx.14433.1.S1_at1/115+11043698..11045244retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5881.1.S1_at--157--1312Chr05:11024126..11024150 (25 bp)
AGATGATCATCAACCCGGAGACGCC
LOC_Os05g19030
Os.5881.1.S1_at--1111--8871Chr05:11024379..11024403 (25 bp)
TGAGTTCGGCTACCCCACGGCGAAA
LOC_Os05g19030
Os.5881.1.S1_at--206--9431Chr05:11024417..11024441 (25 bp)
TCGGTGACCCCAGGACATGGGAGCT
LOC_Os05g19030
Os.5881.1.S1_at--80--1911Chr05:11024444..11024468 (25 bp)
ACGTCGGAGCATTGTCGCAGGCGCT
LOC_Os05g19030
Os.5881.1.S1_at--654--9512Chr05:11024468..11024760 (25 bp)
TCTACTTCTACCAGGATCCGGGCAC
LOC_Os05g19030
Os.5881.1.S1_at--955--4131Chr05:11024787..11024811 (25 bp)
CGCTGGACGTCGGAACGGAGATATA
LOC_Os05g19030
Os.5881.1.S1_at--1095--311Chr05:11024809..11024833 (25 bp)
ATACGTCAGCAAGTATGCGGAGGCA
LOC_Os05g19030
Os.5881.1.S1_at--355--7511Chr05:11024836..11024860 (25 bp)
GTGGACGCTGAGTGGATTCGACATT
LOC_Os05g19030
Os.5881.1.S1_at--811--10611Chr05:11024852..11024876 (25 bp)
TTCGACATTGTTGTGCCGGAGGAAT
LOC_Os05g19030
Os.5881.1.S1_at--740--8011Chr05:11024869..11024893 (25 bp)
GGAGGAATGCATTGGGTCGTCCCAA
LOC_Os05g19030
Os.5881.1.S1_at--53--2911Chr05:11024892..11024916 (25 bp)
AAGGAGGACCCGTCAGTCGATGTTT
LOC_Os05g19030
Target Sequence 
AGATGATCATCAACCCGGAGACGCCGTCGTGGTGCACGCGGAGGCGCATCGAGGAGTGCCCGCCGTGGCACACGTTCCGG
AACGGCACCCGCGTGCACCGCACCGACGCGGCCCGCTTCCCCTACGCGGCGTACCACGTNTACTGCTCTCCCGGGAACGC
GCGCGNCGCCGAGGAGCCGACCACCTACTGCGACGCGTACAGCAACCCGCAGCCGCAGGAGATCCTGCAGCTCGTGCCGC
ACCCGGTGTGGGGTGAGTTCGGCTACCCCACGGCGAAAGGCCAGGGGTGGATCGGTGACCCCAGGACATGGGAGCTCGAC
GTCGGAGCATTGTCGCAGGCGCTCTACTTCTACCAGGATCCGGGCACGCCACCGGCGAAGAGGAGGTGGTCGTCGCTGGA
CGTCGGAACGGAGATATACGTCAGCAAGTATGCGGAGGCAGAGTGGACGCTGAGTGGATTCGACATTGTTGTGCCGGAGG
AATGCATTGGGTCGTCCCAAGGAGGACCCGTCAGTCGATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis