Browse Element(s) Details


Os.39476.1.S1_at

Description gb:NM_195041.1
DB_XREF= gi:37531441
TID=Os.39476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39476 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative TNP2 transposon (OSJNAb0015J03.19), mRNA.
PROD=putative TNP2 transposon
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0866011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g130807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g019007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g181806/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g059206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g305205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g189904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g353504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g313303/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os10g08680OsAffx.8454.1.S1_at10/1110+4475208..4480054hypothetical protein
LOC_Os10g08690OsAffx.20711.1.S1_x_at11/1110+4480751..4480996retrotransposon protein, putative, unclassified
LOC_Os10g08696Os.45173.1.S1_x_at3/1110+4481739..4483757retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08702NANA10+4484046..4488360retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39476.1.S1_at--462--858Chr12:7262472..7262495 (24 bp)
ATGGCAGACCGCGATGACGAACAAA
NONE
Os.39476.1.S1_at--925--118Chr12:7262502..7262524 (23 bp)
ATTAGACACGATCGCAGAGGGCAGT
LOC_Os12g13080
Os.39476.1.S1_at--474--6495Chr12:7262640..7262664 (25 bp)
GATAGTCAACCGTCGGCCGGACAGA
LOC_Os12g13080
Os.39476.1.S1_at--456--2098Chr12:7262713..7262737 (25 bp)
ACATCGTTACTGAGATTGCCCCAGA
LOC_Os12g13080
Os.39476.1.S1_at--159--5991Chr10:4456980..4457004 (25 bp)
GAGACAACGTCCCTATCAGCATAGT
LOC_Os10g08660
Os.39476.1.S1_at--132--1118Chr12:7262825..7262849 (25 bp)
AGTGTACTGGCGTCGAACTAGGTCA
LOC_Os12g13080
Os.39476.1.S1_at--1021--6317Chr08:11145035..11145059 (25 bp)
GATGAAGATAGCTTTCTCCCTGACA
LOC_Os08g18180
Os.39476.1.S1_at--245--1478Chr12:7262884..7262908 (25 bp)
AGAAGGACATGTTGTGGACCACCAT
LOC_Os12g13080
Os.39476.1.S1_at--828--1717Chr12:7262901..7262925 (25 bp)
ACCACCATGCTGGAGACATTCACGA
LOC_Os12g13080
Os.39476.1.S1_at--64--5692Chr12:7262915..7262949 (25 bp)
GACATTCACGATCCCTGAGGTAGAT
LOC_Os12g13080
Os.39476.1.S1_at--485--8891Chr10:4456853..4456877 (25 bp)
TGAGGTAGATCGTCCCAGATGCAAA
LOC_Os10g08660
Target Sequence 
ATGGCAGACCGCGATGACGAACAAATCCTATTAGACACGATCGCAGAGGGCAGTAGTCAGTACTGGGTGGATGATGAGGG
GAACGAGGATCCCAACCAATACCTGAACAAGGAGGGCAACGATGAGGGTAACCAGGAGGCTAACCAGGAGGGGACCGAGG
AGGGGACTGATAGTCAACCGTCGGCCGGACAGAAGAGGCCACGCAGGAAAAGAGGTCCCGCGAAGAAGCTTGAGGGAAGG
CACATCGTTACTGAGATTGCCCCAGACGGCGAACCAGTAGCCCCGGCGGGTATAGGACGAAAGTTTGTGGATCATTGTGG
TTGGGTCGTGAGAGACAACGTCCCTATCAGCATAGTGTACTGGCGTCGAACTAGGTCACGCGGGGATGAAGATAGCTTTC
TCCCTGACACAGAGAAGGACATGTTGTGGACCACCATGCTGGAGACATTCACGATCCCTGAGGTAGATCGTCCCAGATGC
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis