Browse Element(s) Details


Os.9028.1.S1_at

Description gb:AK065383.1
DB_XREF= gi:32975401
TID=Os.9028.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003F10, full insert sequence.
FL= gb:AK065383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3490011/11expressed protein
LOC_Os10g086402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein
LOC_Os12g34930OsAffx.19971.1.S1_at10/1112+21229911..21230609hypothetical protein
LOC_Os12g34940OsAffx.7791.1.S1_at10/1112+21234784..21236856hypothetical protein
LOC_Os12g34950Os.45957.4.S1_x_at6/1112+21237995..21244677retrotransposon protein, putative, unclassified
LOC_Os12g34950OsAffx.32028.1.S1_at2/1112+21237995..21244677retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9028.1.S1_at--518--1132Chr12:21216171..21216195 (25 bp)
AGTGCTGCTGCTAGCATCTTACAAG
LOC_Os12g34900
Os.9028.1.S1_at--980--2834Chr12:21216232..21216256 (25 bp)
AAGTATCTCGTTGATTCTCAGAGTT
LOC_Os12g34900
Os.9028.1.S1_at--1054--2253Chr12:21216274..21216298 (25 bp)
AAATATGTTTGCTTTCTTTTATGGC
LOC_Os12g34900
Os.9028.1.S1_at--270--10631Chr12:21216490..21216514 (25 bp)
TTCGTCGGCTCAACGTTGATTTGTT
LOC_Os12g34900
Os.9028.1.S1_at--263--3531Chr12:21216547..21216571 (25 bp)
CATGCGTAGATGGATCATTGGCCTT
LOC_Os12g34900
Os.9028.1.S1_at--753--11Chr12:21216563..21216587 (25 bp)
ATTGGCCTTGATCTATATTGTCGTA
LOC_Os12g34900
Os.9028.1.S1_at--80--8714Chr12:21216581..21216605 (25 bp)
TGTCGTATTAGTCTTGGCATCAATC
LOC_Os12g34900
Os.9028.1.S1_at--241--1793Chr12:21216612..21216636 (25 bp)
ACCGTATCCTTCAGTGGTGTTGCTG
LOC_Os12g34900
Os.9028.1.S1_at--729--10473Chr12:21216648..21216672 (25 bp)
TTACTGGAGCTGTTGTGATCTTTAA
LOC_Os12g34900
Os.9028.1.S1_at--413--1231Chr12:21216675..21216699 (25 bp)
AGTTCTGTTTATTCTACCGATGTAC
LOC_Os12g34900
Os.9028.1.S1_at--1123--3712Chr12:21216688..21216712 (25 bp)
CTACCGATGTACCACATTGCATGTG
LOC_Os12g34900
Target Sequence 
AGTGCTGCTGCTAGCATCTTACAAGGTCATTAAACTGTATGATGGGGGGATTGGTTCAATTAAGTATCTCGTTGATTCTC
AGAGTTATTTTCTATATGGAAAAAAATATGTTTGCTTTCTTTTATGGCAAAGCAATTCACAACAGCAATCTTATGGCTAT
GAAATACTAGGTTTAAGTGAAATCATATTTATTTTGCTGATTTGTGATACTTAGAAGTAACCTTCATTTTTTTTTTTATC
CAGATGGCTATGAGAATGCCTCTCCAGAGCCGTGGTGACAGATATCTGTCGACAGGGAGGACTTGAGAATCTGCAGCACT
TCGTCGGCTCAACGTTGATTTGTTTTATTGGCGTTGTCTTGCTTGTTGGATTCGTGCATGCGTAGATGGATCATTGGCCT
TGATCTATATTGTCGTATTAGTCTTGGCATCAATCTTCATCACCGTATCCTTCAGTGGTGTTGCTGTTGTGATTTTTTTA
CTGGAGCTGTTGTGATCTTTAATTAGTTCTGTTTATTCTACCGATGTACCACATTGCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis