Browse Element(s) Details


Os.27772.2.S1_at

Description gb:AK099502.1
DB_XREF= gi:32984711
TID=Os.27772.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028J05, full insert sequence.
FL= gb:AK099502.1 gb:AK059125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3486011/11phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34820OsAffx.32026.1.S1_at11/1112+21167251..21167925hypothetical protein
LOC_Os12g34830NANA12+21170282..21170485hypothetical protein
LOC_Os12g34840Os.40429.1.S1_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_s_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_at3/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34850Os.6265.1.S1_at11/1112+21176993..21181347Fibronectin type III domain containing protein, expressed
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006432biological_processphenylalanyl-tRNA aminoacylation
GO:0004826molecular_functionphenylalanine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27772.2.S1_at--11--8511Chr12:21191850..21191874 (25 bp)
TGGAACGTTCACTTACCGATGAGGA
LOC_Os12g34860
Os.27772.2.S1_at--481--291Chr12:21192021..21192045 (25 bp)
ATAGAGCTAGTTCACGTGTTCGACC
LOC_Os12g34860
Os.27772.2.S1_at--1116--7411Chr12:21192036..21192060 (25 bp)
GTGTTCGACCAGACATTGATTGTTT
LOC_Os12g34860
Os.27772.2.S1_at--101--6611Chr12:21192053..21192077 (25 bp)
GATTGTTTGACCATTTTCGTCTGTA
LOC_Os12g34860
Os.27772.2.S1_at--866--6291Chr12:21192128..21192152 (25 bp)
GATGATCCTTGTAATCTGCTGAGAT
LOC_Os12g34860
Os.27772.2.S1_at--1059--8551Chr12:21192147..21192171 (25 bp)
TGAGATCAAAGTCCCTAAGCAATTT
LOC_Os12g34860
Os.27772.2.S1_at--550--2731Chr12:21192163..21192187 (25 bp)
AAGCAATTTAGCATCATCCGCACGC
LOC_Os12g34860
Os.27772.2.S1_at--1080--4111Chr12:21192181..21192205 (25 bp)
CGCACGCCATGACTGTAACGATAAT
LOC_Os12g34860
Os.27772.2.S1_at--912--2471Chr12:21192255..21192279 (25 bp)
AACAGCCATTTTGCAGCTCTTATTT
LOC_Os12g34860
Os.27772.2.S1_at--830--2391Chr12:21192406..21192430 (25 bp)
AAACTATCATGTCTGCTTTCTTCCA
LOC_Os12g34860
Os.27772.2.S1_at--1001--10551Chr12:21192423..21192447 (25 bp)
TTCTTCCATATACCTTGTTTGTCAA
LOC_Os12g34860
Target Sequence 
TGGAACGTTCACTTACCGATGAGGAGATCAACGACATGCAGTGGAATGTCAGAGAAGAGGTGCAAAATAAACTGAAAGTT
GAGTTGAGATGAAATAGAGCTAGTTCACGTGTTCGACCAGACATTGATTGTTTGACCATTTTCGTCTGTACATTCATTCA
AAAGTGTGTTGATATATGGAGAAAATTTTATCAGTTTCCTGATGATCCTTGTAATCTGCTGAGATCAAAGTCCCTAAGCA
ATTTAGCATCATCCGCACGCCATGACTGTAACGATAATAAGACGGTGCTCAATTTTGAATCAAACTAATATACAGAAAAA
CAAANCAAACAGCCATTTTGCAGCTCTTATTTTTCTTCATTTGAGCAGATTTAGAATCTGTATGACAGTATGTTCATGTT
CAGACTTCAGACAGGAGATTGAACATACAAGAGTTTTGGAAGATTTATTCAGAACAATTTCATGTATTAAACTAACTGAA
ACTATCATGTCTGCTTTCTTCCATATACCTTGTTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27772.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis