Browse Element(s) Details


Os.47726.1.S1_at

Description gb:AK120370.1
DB_XREF= gi:37989993
TID=Os.47726.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.47726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070J18, full insert sequence.
FL= gb:AK060472.1 gb:AK120370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3489010/11Acyl carrier protein I, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein
LOC_Os12g34930OsAffx.19971.1.S1_at10/1112+21229911..21230609hypothetical protein
LOC_Os12g34940OsAffx.7791.1.S1_at10/1112+21234784..21236856hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47726.1.S1_at--89--2871Chr12:21208099..21208123 (25 bp)
AAGGCCAAGTCAGCTTCGTTTTAAG
LOC_Os12g34890
Os.47726.1.S1_at--377--9751NONE
TAAGATTTGCTGCTCGGCTAAGAAA
NONE
Os.47726.1.S1_at--181--2251Chr12:21207471..21207495 (25 bp)
AAATTCTCTGAACTCGGTGCTGATT
LOC_Os12g34890
Os.47726.1.S1_at--768--8211Chr12:21207331..21207355 (25 bp)
GGAATTCAACATCACTGTCGACGAA
LOC_Os12g34890
Os.47726.1.S1_at--329--3111Chr12:21207214..21207238 (25 bp)
AATTCATCAGCCCTTTCGGAAACGC
LOC_Os12g34890
Os.47726.1.S1_at--1001--1811Chr12:21207193..21207217 (25 bp)
ACGCCAAAGGGCTGCTGCTATGTTT
LOC_Os12g34890
Os.47726.1.S1_at--350--8451Chr12:21207119..21207143 (25 bp)
GGCCAACTTTGCATTCTATCTGTAT
LOC_Os12g34890
Os.47726.1.S1_at--197--8771Chr12:21207094..21207118 (25 bp)
TGTATGTTCAGTCATTCCTGCTACC
LOC_Os12g34890
Os.47726.1.S1_at--34--9971Chr12:21207073..21207097 (25 bp)
TACCCCATTTATTCTTTCCTTGATC
LOC_Os12g34890
Os.47726.1.S1_at--797--51Chr12:21207002..21207026 (25 bp)
ATTGAGACCACTTGTTCTGTGCCAC
LOC_Os12g34890
Os.47726.1.S1_at--180--9211Chr12:21206983..21207007 (25 bp)
TGCCACTTCCATTTCATGTACTGTA
LOC_Os12g34890
Target Sequence 
AAGGCCAAGTCAGCTTCGTTTTAAGATTTGCTGCTCGGCTAAGAAAGAGACAGTCGACAAGGTTTGCAACATAGTTAAGA
CACAGCTGGCACTCCCTGAGGGAACTGCTGTCACTGGTGAATCAAAATTCTCTGAACTCGGTGCTGATTCACTGGATACG
GTTGAGATTGTGATGGGCCTCGAGGAGGAATTCAACATCACTGTCGACGAAACAAGTGCGCAGGACATCGCAACTGTTCA
AGATGCAGCAAACCTGATCGAGAAGCTCGTGCTGGAGAAGGCTGCATAAAAACCATGCACCTCAATTCATCAGCCCTTTC
GGAAACGCCAAAGGGCTGCTGCTATGTTTTGATCTCNCAATTGCGTTTCGGGAGAGAATACGTTCTTCTAAAATTTATGG
CCAACTTTGCATTCTATCTGTATTGTATGTTCAGTCATTCCTGCTACCCCATTTATTCTTTCCTTGATCATTGAAGGTAG
GGTTTTGTACTCCAAAGGCTACATGAGGGAAATTAATTGAGACCACTTGTTCTGTGCCACTTCCATTTCATGTACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis