Browse Element(s) Details


OsAffx.19971.1.S1_at

Description tigr:9640.m03376
TID=OsAffx.19971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3493010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein
LOC_Os12g34930OsAffx.19971.1.S1_at10/1112+21229911..21230609hypothetical protein
LOC_Os12g34940OsAffx.7791.1.S1_at10/1112+21234784..21236856hypothetical protein
LOC_Os12g34950Os.45957.4.S1_x_at6/1112+21237995..21244677retrotransposon protein, putative, unclassified
LOC_Os12g34950OsAffx.32028.1.S1_at2/1112+21237995..21244677retrotransposon protein, putative, unclassified
LOC_Os12g34960OsAffx.32028.2.A1_at11/1112+21247097..21247541hypothetical protein
LOC_Os12g34970OsAffx.19972.1.S1_at3/1112+21249760..21252428hypothetical protein
LOC_Os12g34970Os.8254.1.S1_at1/1112+21249760..21252428hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19971.1.S1_at--153--1812Chr07:4112508..4112951 (25 bp)
ACCCAAAAGGTTCTTGCACATCCTG
NONE
OsAffx.19971.1.S1_at--635--2311NONE
AAAGGTTCTTGCACATCCTGGTGTA
NONE
OsAffx.19971.1.S1_at--942--7892Chr07:4112935..4112959 (25 bp)
GGTTCTTGCACATCCTGGTGTACTG
NONE
OsAffx.19971.1.S1_at--962--552Chr07:4112946..4112970 (25 bp)
ATCCTGGTGTACTGCTCCCTTTCAG
NONE
OsAffx.19971.1.S1_at--1017--7434Chr07:4112952..4112976 (25 bp)
GTGTACTGCTCCCTTTCAGACCTAT
NONE
OsAffx.19971.1.S1_at--1093--9314Chr07:4112961..4112985 (25 bp)
TCCCTTTCAGACCTATCAGCAACGA
NONE
OsAffx.19971.1.S1_at--1059--3674Chr07:4112964..4112988 (25 bp)
CTTTCAGACCTATCAGCAACGATGT
NONE
OsAffx.19971.1.S1_at--56--3674Chr07:4112973..4112997 (25 bp)
CTATCAGCAACGATGTCTTCAGCCA
NONE
OsAffx.19971.1.S1_at--1043--9654Chr07:4112976..4113000 (25 bp)
TCAGCAACGATGTCTTCAGCCACTA
NONE
OsAffx.19971.1.S1_at--27--2591Chr12:21230084..21230108 (25 bp)
AACGATGTCTTCAGCCACTACCCGG
LOC_Os12g34930
OsAffx.19971.1.S1_at--92--9491Chr12:21229949..21229973 (25 bp)
TCTGCTCGCCGGTTTCTGGGCGCCG
LOC_Os12g34930
Target Sequence 
ACCCAAAAGGTTCTTGCACATCCTGGTGTACTGCTCCCTTTCAGACCTATCAGCAACGATGTCTTCAGCCACTACCCGGC
GATACCCATCGCTCAGCCCGTACCAGCACGGCCGCGCGTGGATGCGCCACCACTCGTCGCTCTGCAGCTTCCTCCTGCTC
ATCCCTCGCTGCCGCCCCACCACGCCGGCTCTGCTCGCCGGTTTCTGGGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis