Browse Element(s) Details


Os.45957.4.S1_x_at

Description gb:NM_189023.1
DB_XREF= gi:34905129
GEN=P0686C03.48
TID=Os.45957.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.48 (P0686C03.48), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0686C03.48 (P0686C03.48), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4055011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g175708/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g312108/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g298108/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g189706/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g294706/11retrotransposon protein, putative, unclassified
LOC_Os06g056806/11retrotransposon protein, putative, unclassified
LOC_Os02g068106/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g145006/11retrotransposon protein, putative, unclassified
LOC_Os08g244106/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g349506/11retrotransposon protein, putative, unclassified
LOC_Os07g172606/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g121205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g218205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g441905/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g499105/11retrotransposon protein, putative, unclassified
LOC_Os02g524105/11expressed protein
LOC_Os04g524794/11expressed protein
LOC_Os08g150104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g093844/11ankyrin-like protein, putative, expressed
LOC_Os02g202004/11retrotransposon protein, putative, unclassified
LOC_Os12g109001/11retrotransposon protein, putative, unclassified
LOC_Os04g358701/11retrotransposon protein, putative, unclassified
LOC_Os02g177201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g346701/11prefoldin subunit 5, putative, expressed
LOC_Os02g336201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g312541/11acetyltransferase, GNAT family protein, expressed
LOC_Os03g243391/11PWWP domain containing protein, expressed
LOC_Os04g209901/11expressed protein
LOC_Os10g254871/11Leucine Rich Repeat family protein, expressed
LOC_Os04g133501/11retrotransposon protein, putative, unclassified
LOC_Os04g209701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g092601/11retrotransposon protein, putative, unclassified
LOC_Os02g290301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g324501/11DNA topoisomerase III beta-1, putative, expressed
LOC_Os02g263491/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g415201/11retrotransposon protein, putative, unclassified
LOC_Os03g039491/11expressed protein
LOC_Os12g400601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40510Os.11481.1.S1_s_at11/118+25510771..25512440expressed protein
LOC_Os08g40520Os.43185.1.S1_at11/118+25516041..25518798expressed protein
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0006457biological_processprotein folding
GO:0006808biological_processregulation of nitrogen utilization
GO:0006952biological_processdefense response
GO:0009910biological_processnegative regulation of flower development
GO:0048497biological_processmaintenance of floral organ identity
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0016272cellular_componentprefoldin complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
GO:0003916molecular_functionDNA topoisomerase activity
GO:0003917molecular_functionDNA topoisomerase type I activity
GO:0005515molecular_functionprotein binding
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45957.4.S1_x_at--707--105525Chr12:11049717..11049741 (25 bp)
TTCTTCCTCGGCGAGTGCCTCGTTA
NONE
Os.45957.4.S1_x_at--748--95725Chr12:11049718..11049742 (25 bp)
TCTTCCTCGGCGAGTGCCTCGTTAG
NONE
Os.45957.4.S1_x_at--575--106730Chr12:11049720..11049744 (25 bp)
TTCCTCGGCGAGTGCCTCGTTAGCT
NONE
Os.45957.4.S1_x_at--1097--92330Chr12:11049721..11049745 (25 bp)
TCCTCGGCGAGTGCCTCGTTAGCTG
NONE
Os.45957.4.S1_x_at--409--94532Chr12:11049724..11049748 (25 bp)
TCGGCGAGTGCCTCGTTAGCTGGCA
NONE
Os.45957.4.S1_x_at--885--1415Chr12:11049866..11049890 (25 bp)
AGACACTGGAGCAGTAGAGCTCAGG
NONE
Os.45957.4.S1_x_at--804--2175Chr12:11049868..11049892 (25 bp)
ACACTGGAGCAGTAGAGCTCAGGGT
NONE
Os.45957.4.S1_x_at--129--3457Chr12:11049877..11049901 (25 bp)
CAGTAGAGCTCAGGGTGGACAGCAA
NONE
Os.45957.4.S1_x_at--492--2031Chr08:25536041..25536065 (25 bp)
ACTTCATTCAAAGCTACTTGGAGGA
LOC_Os08g40550
Os.45957.4.S1_x_at--823--3651Chr08:25536040..25536064 (25 bp)
CTTCATTCAAAGCTACTTGGAGGAA
LOC_Os08g40550
Os.45957.4.S1_x_at--273--139Chr12:5899277..5899296 (20 bp)
ATTCAAAGCTACTTGGAGGAAGGGA
LOC_Os12g10900
Target Sequence 
TTCTTCCTCGGCGAGTGCCTCGTTAGCTGGCAGTCGGTCAAGCAGCAGGTGGTGGCCCTGTCCAGCTGCGAGGCCGAGTA
CATGGCGGCATCCGCCGCTTCGACCCAGGCGCTCTGGCTTGCTCGACTGCTTGGTGATCTCCTCGGCAGAGACACTGGAG
CAGTAGAGCTCAGGGTGGACAGCAAGTCCGCTCTGGCCCTGGCAAAGAACCCCGTTTTTCACGAACGGAGCAAGCACATC
TGGGTGAGGTACCACTTCATTCAAAGCTACTTGGAGGAAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45957.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis